miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24962 5' -57.5 NC_005284.1 + 16030 0.66 0.605916
Target:  5'- gGGC-GCGAcgAGAuccgcauUGCGCCGguaAUCGUCGg -3'
miRNA:   3'- aCCGaCGCU--UCU-------GCGCGGU---UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 16291 0.69 0.412821
Target:  5'- aGcGCUGCGcAGGGCGaGCCGGU-GCCGc -3'
miRNA:   3'- aC-CGACGC-UUCUGCgCGGUUAgCGGC- -5'
24962 5' -57.5 NC_005284.1 + 16687 0.68 0.450801
Target:  5'- aGGCcgGCGucGGCGUGCCgcugacguccgAcgCGCCGu -3'
miRNA:   3'- aCCGa-CGCuuCUGCGCGG-----------UuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 17362 0.66 0.574566
Target:  5'- cGGCUGCGAuaACGUcccgGCCGGcuaCGUCGg -3'
miRNA:   3'- aCCGACGCUucUGCG----CGGUUa--GCGGC- -5'
24962 5' -57.5 NC_005284.1 + 17584 0.68 0.450801
Target:  5'- cGGCaGCGAacgcaAGACGCGUuacaCGGUCGCg- -3'
miRNA:   3'- aCCGaCGCU-----UCUGCGCG----GUUAGCGgc -5'
24962 5' -57.5 NC_005284.1 + 17913 0.72 0.281586
Target:  5'- cGGCUgGCGAaaGGAUcacgcucgacaagGCGCCGAcaaUCGCCGc -3'
miRNA:   3'- aCCGA-CGCU--UCUG-------------CGCGGUU---AGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 18920 0.71 0.32706
Target:  5'- uUGGCa-CGGAGcugcGCGCGCCGAUCGaCCu -3'
miRNA:   3'- -ACCGacGCUUC----UGCGCGGUUAGC-GGc -5'
24962 5' -57.5 NC_005284.1 + 19009 0.66 0.596157
Target:  5'- cUGGCgUGUGGucgcuGcAgGCGgCGAUCGCCGa -3'
miRNA:   3'- -ACCG-ACGCUu----C-UgCGCgGUUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 19415 0.69 0.412821
Target:  5'- aGGC-GUGAucGGCGCGCCGuUCGuuGu -3'
miRNA:   3'- aCCGaCGCUu-CUGCGCGGUuAGCggC- -5'
24962 5' -57.5 NC_005284.1 + 21497 0.66 0.592909
Target:  5'- cGGUUGCGGgaugcauggcaagaAGcACGCGCgGcagcAUCGCCc -3'
miRNA:   3'- aCCGACGCU--------------UC-UGCGCGgU----UAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 21814 0.66 0.585343
Target:  5'- cGGUgGCGAcGGCGUGCCcggCGCUu -3'
miRNA:   3'- aCCGaCGCUuCUGCGCGGuuaGCGGc -5'
24962 5' -57.5 NC_005284.1 + 21894 0.72 0.261788
Target:  5'- cGGUUGCGGA-ACGCGUUuucggcGUCGCCGg -3'
miRNA:   3'- aCCGACGCUUcUGCGCGGu-----UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 22031 0.68 0.450801
Target:  5'- cGGCgUGCGugcgGGAacaCGCauGCCGGUCGCCu -3'
miRNA:   3'- aCCG-ACGCu---UCU---GCG--CGGUUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 22754 0.76 0.150489
Target:  5'- cGGCUGCGGucgaucaagGGGCGCGC-GAUCGUCa -3'
miRNA:   3'- aCCGACGCU---------UCUGCGCGgUUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 22864 0.66 0.563836
Target:  5'- aGGCgGCGGgaAGG-GCGUCGAgCGCCGc -3'
miRNA:   3'- aCCGaCGCU--UCUgCGCGGUUaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 23329 0.66 0.589664
Target:  5'- cGGCacgGCGGucaauugggggcccGGCGCGCCGcagcggcgcacGUCGCCc -3'
miRNA:   3'- aCCGa--CGCUu-------------CUGCGCGGU-----------UAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 23503 0.68 0.460593
Target:  5'- gUGGC-GCGcGGACcuguucCGCCuGAUCGCCGa -3'
miRNA:   3'- -ACCGaCGCuUCUGc-----GCGG-UUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 25288 0.66 0.568122
Target:  5'- aUGGCUaccaaucgcaagaaaGCGAAGuaucCGCGCguGUaCGCCa -3'
miRNA:   3'- -ACCGA---------------CGCUUCu---GCGCGguUA-GCGGc -5'
24962 5' -57.5 NC_005284.1 + 26262 0.69 0.385666
Target:  5'- gGGUaugacGUGAAGGCGCuCCaAAUCGCCGc -3'
miRNA:   3'- aCCGa----CGCUUCUGCGcGG-UUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 26567 0.68 0.470497
Target:  5'- gUGGCcgGCGAgAGugGCGU---UCGCCa -3'
miRNA:   3'- -ACCGa-CGCU-UCugCGCGguuAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.