miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24962 5' -57.5 NC_005284.1 + 4481 0.68 0.441124
Target:  5'- cUGGCUcGCGgcGGCgguaGCGCCGAacucgaaaCGCCGa -3'
miRNA:   3'- -ACCGA-CGCuuCUG----CGCGGUUa-------GCGGC- -5'
24962 5' -57.5 NC_005284.1 + 4661 0.69 0.422131
Target:  5'- cGGUccaugGCGAAcgccGCGUGCgCGAUCGCCGc -3'
miRNA:   3'- aCCGa----CGCUUc---UGCGCG-GUUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 5396 0.7 0.358032
Target:  5'- cGGCUGCuugcccgugcGGCGCGCCAGcUCGCg- -3'
miRNA:   3'- aCCGACGcuu-------CUGCGCGGUU-AGCGgc -5'
24962 5' -57.5 NC_005284.1 + 5510 0.7 0.351344
Target:  5'- cGGCcGUGAAG-CGCGCUucgucacGUCGCCu -3'
miRNA:   3'- aCCGaCGCUUCuGCGCGGu------UAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 5888 0.67 0.520484
Target:  5'- cGGCgcaGCGAcaccuucgccgccGGGCGUGuCCAcggCGCCGa -3'
miRNA:   3'- aCCGa--CGCU-------------UCUGCGC-GGUua-GCGGC- -5'
24962 5' -57.5 NC_005284.1 + 6560 0.68 0.474488
Target:  5'- gUGGCuggUGCGAaggugauccgugacgAGGCGCGUaagCGcgCGCCGa -3'
miRNA:   3'- -ACCG---ACGCU---------------UCUGCGCG---GUuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 6791 0.73 0.248805
Target:  5'- cGGCcgGCGuuuGAUGCGUCGAUCGgCGa -3'
miRNA:   3'- aCCGa-CGCuu-CUGCGCGGUUAGCgGC- -5'
24962 5' -57.5 NC_005284.1 + 6942 0.68 0.480508
Target:  5'- cGGCgucgcacCGGAGAagGCGCCGG-CGCCGu -3'
miRNA:   3'- aCCGac-----GCUUCUg-CGCGGUUaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 7416 0.66 0.563836
Target:  5'- -cGCUGuCGcgcauGACGCGCUucggGAUCGCUGg -3'
miRNA:   3'- acCGAC-GCuu---CUGCGCGG----UUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 9074 0.66 0.55316
Target:  5'- cUGGCcGCGAAGAUGUacaGCCG--UGUCGa -3'
miRNA:   3'- -ACCGaCGCUUCUGCG---CGGUuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 9228 0.69 0.422131
Target:  5'- aGuGC-GCGGGcGACGCGCCAcgCGgCGg -3'
miRNA:   3'- aC-CGaCGCUU-CUGCGCGGUuaGCgGC- -5'
24962 5' -57.5 NC_005284.1 + 9299 0.68 0.480508
Target:  5'- gGGCaGaCGAuGACGCGCCugcagacggaGAUCGUCa -3'
miRNA:   3'- aCCGaC-GCUuCUGCGCGG----------UUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 9667 0.66 0.607001
Target:  5'- gGGCaUGCGAGcGAUGCGCgAAa-GCCu -3'
miRNA:   3'- aCCG-ACGCUU-CUGCGCGgUUagCGGc -5'
24962 5' -57.5 NC_005284.1 + 9768 0.7 0.380378
Target:  5'- aGGCgacgGCGcAagcucacgucgcaacGGcGCGCGCCAacGUCGCCGg -3'
miRNA:   3'- aCCGa---CGC-U---------------UC-UGCGCGGU--UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 10387 0.67 0.531999
Target:  5'- cGGCUGCGcacgaagcaaGAGGCGuCGCgGGcgGCCGa -3'
miRNA:   3'- aCCGACGC----------UUCUGC-GCGgUUagCGGC- -5'
24962 5' -57.5 NC_005284.1 + 10777 0.68 0.460593
Target:  5'- cGGCUGCuuucuGACGCGaaCAAcuucuUCGCCGg -3'
miRNA:   3'- aCCGACGcuu--CUGCGCg-GUU-----AGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 10920 0.66 0.552096
Target:  5'- gGGC-GCGAAuGAUGCgcaggcccgcaugGCCGgccucGUCGCCGg -3'
miRNA:   3'- aCCGaCGCUU-CUGCG-------------CGGU-----UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 11088 0.72 0.266461
Target:  5'- gUGGUcGCGAAGGCGCuugaggaguuccaaGCCGAUCuGUCGa -3'
miRNA:   3'- -ACCGaCGCUUCUGCG--------------CGGUUAG-CGGC- -5'
24962 5' -57.5 NC_005284.1 + 14495 0.67 0.521527
Target:  5'- gGGCUuCGAGcagacauccGACGCGCagcagccAUCGCCGa -3'
miRNA:   3'- aCCGAcGCUU---------CUGCGCGgu-----UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 14936 0.66 0.55316
Target:  5'- cGGUUGCGAAcgucgauuuGGCGUGaauaaCGcgCGCCGu -3'
miRNA:   3'- aCCGACGCUU---------CUGCGCg----GUuaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.