Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24962 | 5' | -57.5 | NC_005284.1 | + | 16030 | 0.66 | 0.605916 |
Target: 5'- gGGC-GCGAcgAGAuccgcauUGCGCCGguaAUCGUCGg -3' miRNA: 3'- aCCGaCGCU--UCU-------GCGCGGU---UAGCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 19009 | 0.66 | 0.596157 |
Target: 5'- cUGGCgUGUGGucgcuGcAgGCGgCGAUCGCCGa -3' miRNA: 3'- -ACCG-ACGCUu----C-UgCGCgGUUAGCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 7416 | 0.66 | 0.563836 |
Target: 5'- -cGCUGuCGcgcauGACGCGCUucggGAUCGCUGg -3' miRNA: 3'- acCGAC-GCuu---CUGCGCGG----UUAGCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 9074 | 0.66 | 0.55316 |
Target: 5'- cUGGCcGCGAAGAUGUacaGCCG--UGUCGa -3' miRNA: 3'- -ACCGaCGCUUCUGCG---CGGUuaGCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 33984 | 0.66 | 0.596157 |
Target: 5'- gGGCUGCucgacaGggGGUGCGgCGAggGCCGa -3' miRNA: 3'- aCCGACG------CuuCUGCGCgGUUagCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 21497 | 0.66 | 0.592909 |
Target: 5'- cGGUUGCGGgaugcauggcaagaAGcACGCGCgGcagcAUCGCCc -3' miRNA: 3'- aCCGACGCU--------------UC-UGCGCGgU----UAGCGGc -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 23329 | 0.66 | 0.589664 |
Target: 5'- cGGCacgGCGGucaauugggggcccGGCGCGCCGcagcggcgcacGUCGCCc -3' miRNA: 3'- aCCGa--CGCUu-------------CUGCGCGGU-----------UAGCGGc -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 36242 | 0.66 | 0.584263 |
Target: 5'- cGGCgGCGGAGugGUuuucccgGUCAGUUGCg- -3' miRNA: 3'- aCCGaCGCUUCugCG-------CGGUUAGCGgc -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 38657 | 0.66 | 0.574566 |
Target: 5'- cGGCUGCGcgaaaccgaACGuCGCCAccgCGCCa -3' miRNA: 3'- aCCGACGCuuc------UGC-GCGGUua-GCGGc -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 21814 | 0.66 | 0.585343 |
Target: 5'- cGGUgGCGAcGGCGUGCCcggCGCUu -3' miRNA: 3'- aCCGaCGCUuCUGCGCGGuuaGCGGc -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 22864 | 0.66 | 0.563836 |
Target: 5'- aGGCgGCGGgaAGG-GCGUCGAgCGCCGc -3' miRNA: 3'- aCCGaCGCU--UCUgCGCGGUUaGCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 14936 | 0.66 | 0.55316 |
Target: 5'- cGGUUGCGAAcgucgauuuGGCGUGaauaaCGcgCGCCGu -3' miRNA: 3'- aCCGACGCUU---------CUGCGCg----GUuaGCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 25288 | 0.66 | 0.568122 |
Target: 5'- aUGGCUaccaaucgcaagaaaGCGAAGuaucCGCGCguGUaCGCCa -3' miRNA: 3'- -ACCGA---------------CGCUUCu---GCGCGguUA-GCGGc -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 32754 | 0.66 | 0.585343 |
Target: 5'- cGGCaUGCGuguucccgcACGCacGCCGGUCGCCc -3' miRNA: 3'- aCCG-ACGCuuc------UGCG--CGGUUAGCGGc -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 39702 | 0.66 | 0.574566 |
Target: 5'- cGGauacuCUGCGAGcGCGUGCgccuCAAUCGCCu -3' miRNA: 3'- aCC-----GACGCUUcUGCGCG----GUUAGCGGc -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 38088 | 0.66 | 0.563836 |
Target: 5'- cGGC-GCGucGGACGUcagcggcacGCCGA-CGCCGg -3' miRNA: 3'- aCCGaCGCu-UCUGCG---------CGGUUaGCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 9667 | 0.66 | 0.607001 |
Target: 5'- gGGCaUGCGAGcGAUGCGCgAAa-GCCu -3' miRNA: 3'- aCCG-ACGCUU-CUGCGCGgUUagCGGc -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 10920 | 0.66 | 0.552096 |
Target: 5'- gGGC-GCGAAuGAUGCgcaggcccgcaugGCCGgccucGUCGCCGg -3' miRNA: 3'- aCCGaCGCUU-CUGCG-------------CGGU-----UAGCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 17362 | 0.66 | 0.574566 |
Target: 5'- cGGCUGCGAuaACGUcccgGCCGGcuaCGUCGg -3' miRNA: 3'- aCCGACGCUucUGCG----CGGUUa--GCGGC- -5' |
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24962 | 5' | -57.5 | NC_005284.1 | + | 14495 | 0.67 | 0.521527 |
Target: 5'- gGGCUuCGAGcagacauccGACGCGCagcagccAUCGCCGa -3' miRNA: 3'- aCCGAcGCUU---------CUGCGCGgu-----UAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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