miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24962 5' -57.5 NC_005284.1 + 35593 0.68 0.460593
Target:  5'- cGcGCUGCGGAGACucagGCaGCCugucgacagCGCCGa -3'
miRNA:   3'- aC-CGACGCUUCUG----CG-CGGuua------GCGGC- -5'
24962 5' -57.5 NC_005284.1 + 42241 0.69 0.421194
Target:  5'- cUGGCUuucccgcagacgaGCGuuuGGGCgaguguGCGCCGGUCGUCGa -3'
miRNA:   3'- -ACCGA-------------CGCu--UCUG------CGCGGUUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 4481 0.68 0.441124
Target:  5'- cUGGCUcGCGgcGGCgguaGCGCCGAacucgaaaCGCCGa -3'
miRNA:   3'- -ACCGA-CGCuuCUG----CGCGGUUa-------GCGGC- -5'
24962 5' -57.5 NC_005284.1 + 16687 0.68 0.450801
Target:  5'- aGGCcgGCGucGGCGUGCCgcugacguccgAcgCGCCGu -3'
miRNA:   3'- aCCGa-CGCuuCUGCGCGG-----------UuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 17584 0.68 0.450801
Target:  5'- cGGCaGCGAacgcaAGACGCGUuacaCGGUCGCg- -3'
miRNA:   3'- aCCGaCGCU-----UCUGCGCG----GUUAGCGgc -5'
24962 5' -57.5 NC_005284.1 + 22031 0.68 0.450801
Target:  5'- cGGCgUGCGugcgGGAacaCGCauGCCGGUCGCCu -3'
miRNA:   3'- aCCG-ACGCu---UCU---GCG--CGGUUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 45071 0.68 0.450801
Target:  5'- gGGCgagcGCGGcuACGCGCUcgugaAGUUGCCGa -3'
miRNA:   3'- aCCGa---CGCUucUGCGCGG-----UUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 10777 0.68 0.460593
Target:  5'- cGGCUGCuuucuGACGCGaaCAAcuucuUCGCCGg -3'
miRNA:   3'- aCCGACGcuu--CUGCGCg-GUU-----AGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 31278 0.68 0.460593
Target:  5'- cGGCgaucagGCGGAacagguccGCGCGCCA--CGCCGg -3'
miRNA:   3'- aCCGa-----CGCUUc-------UGCGCGGUuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 19415 0.69 0.412821
Target:  5'- aGGC-GUGAucGGCGCGCCGuUCGuuGu -3'
miRNA:   3'- aCCGaCGCUu-CUGCGCGGUuAGCggC- -5'
24962 5' -57.5 NC_005284.1 + 16291 0.69 0.412821
Target:  5'- aGcGCUGCGcAGGGCGaGCCGGU-GCCGc -3'
miRNA:   3'- aC-CGACGC-UUCUGCgCGGUUAgCGGC- -5'
24962 5' -57.5 NC_005284.1 + 9768 0.7 0.380378
Target:  5'- aGGCgacgGCGcAagcucacgucgcaacGGcGCGCGCCAacGUCGCCGg -3'
miRNA:   3'- aCCGa---CGC-U---------------UC-UGCGCGGU--UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 27676 0.78 0.10509
Target:  5'- gGGCcgGCGu-GGCGCGCgGGUCGCCGc -3'
miRNA:   3'- aCCGa-CGCuuCUGCGCGgUUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 22754 0.76 0.150489
Target:  5'- cGGCUGCGGucgaucaagGGGCGCGC-GAUCGUCa -3'
miRNA:   3'- aCCGACGCU---------UCUGCGCGgUUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 6791 0.73 0.248805
Target:  5'- cGGCcgGCGuuuGAUGCGUCGAUCGgCGa -3'
miRNA:   3'- aCCGa-CGCuu-CUGCGCGGUUAGCgGC- -5'
24962 5' -57.5 NC_005284.1 + 21894 0.72 0.261788
Target:  5'- cGGUUGCGGA-ACGCGUUuucggcGUCGCCGg -3'
miRNA:   3'- aCCGACGCUUcUGCGCGGu-----UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 11088 0.72 0.266461
Target:  5'- gUGGUcGCGAAGGCGCuugaggaguuccaaGCCGAUCuGUCGa -3'
miRNA:   3'- -ACCGaCGCUUCUGCG--------------CGGUUAG-CGGC- -5'
24962 5' -57.5 NC_005284.1 + 30924 0.72 0.275317
Target:  5'- gGGCggGCGccGugGCGCUu-UCGCCGc -3'
miRNA:   3'- aCCGa-CGCuuCugCGCGGuuAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 17913 0.72 0.281586
Target:  5'- cGGCUgGCGAaaGGAUcacgcucgacaagGCGCCGAcaaUCGCCGc -3'
miRNA:   3'- aCCGA-CGCU--UCUG-------------CGCGGUU---AGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 18920 0.71 0.32706
Target:  5'- uUGGCa-CGGAGcugcGCGCGCCGAUCGaCCu -3'
miRNA:   3'- -ACCGacGCUUC----UGCGCGGUUAGC-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.