miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24962 5' -57.5 NC_005284.1 + 48420 1.08 0.000706
Target:  5'- uUGGCUGCGAAGACGCGCCAAUCGCCGc -3'
miRNA:   3'- -ACCGACGCUUCUGCGCGGUUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 27676 0.78 0.10509
Target:  5'- gGGCcgGCGu-GGCGCGCgGGUCGCCGc -3'
miRNA:   3'- aCCGa-CGCuuCUGCGCGgUUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 22754 0.76 0.150489
Target:  5'- cGGCUGCGGucgaucaagGGGCGCGC-GAUCGUCa -3'
miRNA:   3'- aCCGACGCU---------UCUGCGCGgUUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 36899 0.74 0.213033
Target:  5'- -cGCUGCGcGGAUGCGCC---CGCCGa -3'
miRNA:   3'- acCGACGCuUCUGCGCGGuuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 6791 0.73 0.248805
Target:  5'- cGGCcgGCGuuuGAUGCGUCGAUCGgCGa -3'
miRNA:   3'- aCCGa-CGCuu-CUGCGCGGUUAGCgGC- -5'
24962 5' -57.5 NC_005284.1 + 21894 0.72 0.261788
Target:  5'- cGGUUGCGGA-ACGCGUUuucggcGUCGCCGg -3'
miRNA:   3'- aCCGACGCUUcUGCGCGGu-----UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 11088 0.72 0.266461
Target:  5'- gUGGUcGCGAAGGCGCuugaggaguuccaaGCCGAUCuGUCGa -3'
miRNA:   3'- -ACCGaCGCUUCUGCG--------------CGGUUAG-CGGC- -5'
24962 5' -57.5 NC_005284.1 + 32021 0.72 0.268484
Target:  5'- aGGCUGaCGAucGCGCGCCccuuGAUCGaCCGc -3'
miRNA:   3'- aCCGAC-GCUucUGCGCGG----UUAGC-GGC- -5'
24962 5' -57.5 NC_005284.1 + 27841 0.72 0.275317
Target:  5'- aGcGCUGgGAGucgccagacGACGCGCCGcccggcgcAUCGCCGa -3'
miRNA:   3'- aC-CGACgCUU---------CUGCGCGGU--------UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 30924 0.72 0.275317
Target:  5'- gGGCggGCGccGugGCGCUu-UCGCCGc -3'
miRNA:   3'- aCCGa-CGCuuCugCGCGGuuAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 17913 0.72 0.281586
Target:  5'- cGGCUgGCGAaaGGAUcacgcucgacaagGCGCCGAcaaUCGCCGc -3'
miRNA:   3'- aCCGA-CGCU--UCUG-------------CGCGGUU---AGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 27105 0.72 0.2894
Target:  5'- aGGCaGCGgcGacccGCGCGCCA--CGCCGg -3'
miRNA:   3'- aCCGaCGCuuC----UGCGCGGUuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 54323 0.71 0.296651
Target:  5'- cGGCuuUGCGccgaccAGGCGCuGCCGGcUCGCCGg -3'
miRNA:   3'- aCCG--ACGCu-----UCUGCG-CGGUU-AGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 18920 0.71 0.32706
Target:  5'- uUGGCa-CGGAGcugcGCGCGCCGAUCGaCCu -3'
miRNA:   3'- -ACCGacGCUUC----UGCGCGGUUAGC-GGc -5'
24962 5' -57.5 NC_005284.1 + 5510 0.7 0.351344
Target:  5'- cGGCcGUGAAG-CGCGCUucgucacGUCGCCu -3'
miRNA:   3'- aCCGaCGCUUCuGCGCGGu------UAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 5396 0.7 0.358032
Target:  5'- cGGCUGCuugcccgugcGGCGCGCCAGcUCGCg- -3'
miRNA:   3'- aCCGACGcuu-------CUGCGCGGUU-AGCGgc -5'
24962 5' -57.5 NC_005284.1 + 53571 0.7 0.36823
Target:  5'- cGGCUGCcGGcGCGCGCCca-UGCCGg -3'
miRNA:   3'- aCCGACGcUUcUGCGCGGuuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 9768 0.7 0.380378
Target:  5'- aGGCgacgGCGcAagcucacgucgcaacGGcGCGCGCCAacGUCGCCGg -3'
miRNA:   3'- aCCGa---CGC-U---------------UC-UGCGCGGU--UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 26262 0.69 0.385666
Target:  5'- gGGUaugacGUGAAGGCGCuCCaAAUCGCCGc -3'
miRNA:   3'- aCCGa----CGCUUCUGCGcGG-UUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 42508 0.69 0.385666
Target:  5'- cGGCUGCGAcaccacugcGGCGCGgaCCAcgaacUCGCCGu -3'
miRNA:   3'- aCCGACGCUu--------CUGCGC--GGUu----AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.