miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24963 3' -64.2 NC_005284.1 + 35117 0.66 0.268017
Target:  5'- cGCCCGauagGCGGCGUGUuCUGCGGa-- -3'
miRNA:   3'- uUGGGCg---CGCCGCACGcGGCGCUcaa -5'
24963 3' -64.2 NC_005284.1 + 48897 0.66 0.268017
Target:  5'- cGCCCGCGgcgaaGGUGUcgcuGCGCCGCcucGAGa- -3'
miRNA:   3'- uUGGGCGCg----CCGCA----CGCGGCG---CUCaa -5'
24963 3' -64.2 NC_005284.1 + 45552 0.66 0.261529
Target:  5'- cGCCCGcCGCGcGCGUcaGCGCCucgaCGAGa- -3'
miRNA:   3'- uUGGGC-GCGC-CGCA--CGCGGc---GCUCaa -5'
24963 3' -64.2 NC_005284.1 + 2166 0.66 0.25897
Target:  5'- aGAUCCGUGCGGCGgcaaauucagcccGCGCucuuuggucaaCGCGAGa- -3'
miRNA:   3'- -UUGGGCGCGCCGCa------------CGCG-----------GCGCUCaa -5'
24963 3' -64.2 NC_005284.1 + 1685 0.66 0.257698
Target:  5'- cGACaucgaCGgGCGGCGgcauuacuucugcguUGCGCCGCGAu-- -3'
miRNA:   3'- -UUGg----GCgCGCCGC---------------ACGCGGCGCUcaa -5'
24963 3' -64.2 NC_005284.1 + 10652 0.66 0.248938
Target:  5'- aAGCgCUGCGCgaggaacuGGUGcGCGCCGCGGGc- -3'
miRNA:   3'- -UUG-GGCGCG--------CCGCaCGCGGCGCUCaa -5'
24963 3' -64.2 NC_005284.1 + 18472 0.67 0.236852
Target:  5'- uACCuCGCGCGG-GUGCGCgC-CGAGa- -3'
miRNA:   3'- uUGG-GCGCGCCgCACGCG-GcGCUCaa -5'
24963 3' -64.2 NC_005284.1 + 5404 0.67 0.225262
Target:  5'- uGCCCGUGCGGCGcgccagcucGCGCUcgGCGAa-- -3'
miRNA:   3'- uUGGGCGCGCCGCa--------CGCGG--CGCUcaa -5'
24963 3' -64.2 NC_005284.1 + 16687 0.67 0.210917
Target:  5'- aGGCCgGCGuCGGCGUGcCgcugacguccgacgcGCCGUGGGUg -3'
miRNA:   3'- -UUGGgCGC-GCCGCAC-G---------------CGGCGCUCAa -5'
24963 3' -64.2 NC_005284.1 + 15491 0.68 0.182208
Target:  5'- cGCCgaGCGCGGCGUcGCGUuacccgacuucgagCGCGAGg- -3'
miRNA:   3'- uUGGg-CGCGCCGCA-CGCG--------------GCGCUCaa -5'
24963 3' -64.2 NC_005284.1 + 45281 0.68 0.178931
Target:  5'- -cUCCGCGCGGC-UGCGCgGCauggcuGAGUa -3'
miRNA:   3'- uuGGGCGCGCCGcACGCGgCG------CUCAa -5'
24963 3' -64.2 NC_005284.1 + 44703 0.7 0.145053
Target:  5'- aGACCCGcCGCGGuCGcgGuCGCCGCGcGUUc -3'
miRNA:   3'- -UUGGGC-GCGCC-GCa-C-GCGGCGCuCAA- -5'
24963 3' -64.2 NC_005284.1 + 54733 0.7 0.141255
Target:  5'- uGCCCGCcCGGCGgaUGCGCCGgGuGg- -3'
miRNA:   3'- uUGGGCGcGCCGC--ACGCGGCgCuCaa -5'
24963 3' -64.2 NC_005284.1 + 9893 0.71 0.114012
Target:  5'- cGCCCggauaguugugaGCGaCGGCGUGCGCCGUaucGAGa- -3'
miRNA:   3'- uUGGG------------CGC-GCCGCACGCGGCG---CUCaa -5'
24963 3' -64.2 NC_005284.1 + 24659 0.71 0.113705
Target:  5'- -uCgCGCGCGGCGUGCagucgacgugauaGCCGCGAa-- -3'
miRNA:   3'- uuGgGCGCGCCGCACG-------------CGGCGCUcaa -5'
24963 3' -64.2 NC_005284.1 + 43617 0.72 0.096888
Target:  5'- -uCCgCGCGCGGCGgccGCGgCGCGAGc- -3'
miRNA:   3'- uuGG-GCGCGCCGCa--CGCgGCGCUCaa -5'
24963 3' -64.2 NC_005284.1 + 48753 1.03 0.000338
Target:  5'- cAACCCGCGCGGCGUGCGCCGCGAGUUg -3'
miRNA:   3'- -UUGGGCGCGCCGCACGCGGCGCUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.