miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24965 3' -60.4 NC_005284.1 + 34900 0.68 0.364794
Target:  5'- --aUCGCCGAcaGCGAGCUcGuCGUGCa -3'
miRNA:   3'- cgaAGCGGCUcgCGCUCGAcC-GCGCG- -5'
24965 3' -60.4 NC_005284.1 + 45636 0.68 0.348404
Target:  5'- uCUUCGCgGGGCaggcugGCG-GCUcgucGGUGCGCg -3'
miRNA:   3'- cGAAGCGgCUCG------CGCuCGA----CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 37795 0.68 0.348404
Target:  5'- gGCgaucgUCGCCGuGUGCGcGUUcGGCGUGa -3'
miRNA:   3'- -CGa----AGCGGCuCGCGCuCGA-CCGCGCg -5'
24965 3' -60.4 NC_005284.1 + 21555 0.68 0.348404
Target:  5'- gGCUU-GCCGAcgagcaggccGCGCGGGCguucGaCGCGCa -3'
miRNA:   3'- -CGAAgCGGCU----------CGCGCUCGa---CcGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 31004 0.68 0.340408
Target:  5'- cGCUUgcCGCCGuGCGUGcggaaguugccGGUUGGCuCGCu -3'
miRNA:   3'- -CGAA--GCGGCuCGCGC-----------UCGACCGcGCG- -5'
24965 3' -60.4 NC_005284.1 + 45280 0.68 0.340408
Target:  5'- cGC-UCGCCGGGCGcCGAcccacGCUGuCGcCGCc -3'
miRNA:   3'- -CGaAGCGGCUCGC-GCU-----CGACcGC-GCG- -5'
24965 3' -60.4 NC_005284.1 + 27663 0.68 0.324818
Target:  5'- --aUCGCCGcuauacGgGCcGGCgUGGCGCGCg -3'
miRNA:   3'- cgaAGCGGCu-----CgCGcUCG-ACCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 1667 0.69 0.317225
Target:  5'- uGUUUCGCCGugcgaGGCGUGAuGUa-GCGCGCc -3'
miRNA:   3'- -CGAAGCGGC-----UCGCGCU-CGacCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 33493 0.69 0.317225
Target:  5'- cGCcUCGCCGuuGUGCugccgcAGUaGGCGCGCg -3'
miRNA:   3'- -CGaAGCGGCu-CGCGc-----UCGaCCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 43728 0.69 0.316473
Target:  5'- ---cUGCUGAuucaucaGCGCGAGCUcGCGCGUc -3'
miRNA:   3'- cgaaGCGGCU-------CGCGCUCGAcCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 35770 0.69 0.309766
Target:  5'- aGCUUCguGCCGgcGGCGUaGAGCUgaaacaGGCgGCGCu -3'
miRNA:   3'- -CGAAG--CGGC--UCGCG-CUCGA------CCG-CGCG- -5'
24965 3' -60.4 NC_005284.1 + 22238 0.69 0.309766
Target:  5'- uGUUaCGUCGAGguguuCGCGGGCggGGCgGCGCu -3'
miRNA:   3'- -CGAaGCGGCUC-----GCGCUCGa-CCG-CGCG- -5'
24965 3' -60.4 NC_005284.1 + 7684 0.69 0.302441
Target:  5'- aUUUCGgCGAcguacagcgugcGCGUGAGC-GGUGCGCc -3'
miRNA:   3'- cGAAGCgGCU------------CGCGCUCGaCCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 9643 0.69 0.301716
Target:  5'- gGCUUCagcgcagGCCGAGCucgcgggcauGCGAGCgauGCGCGa -3'
miRNA:   3'- -CGAAG-------CGGCUCG----------CGCUCGac-CGCGCg -5'
24965 3' -60.4 NC_005284.1 + 31415 0.69 0.295964
Target:  5'- gGCUUgCGCCaGuuCGCGGGCgacgugcgccgcugcGGCGCGCc -3'
miRNA:   3'- -CGAA-GCGG-CucGCGCUCGa--------------CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 51460 0.69 0.295251
Target:  5'- aGCUgauggaCGUCGAGCGaUGGGCggugaucGCGCGCu -3'
miRNA:   3'- -CGAa-----GCGGCUCGC-GCUCGac-----CGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 27402 0.69 0.288194
Target:  5'- uCUUCGUCagGGGCGCGAuaGUUGGUGCa- -3'
miRNA:   3'- cGAAGCGG--CUCGCGCU--CGACCGCGcg -5'
24965 3' -60.4 NC_005284.1 + 21633 0.69 0.288194
Target:  5'- cGCUcgaCGCCGAGCaGCGuGCgaucGCcGCGCa -3'
miRNA:   3'- -CGAa--GCGGCUCG-CGCuCGac--CG-CGCG- -5'
24965 3' -60.4 NC_005284.1 + 16675 0.69 0.28127
Target:  5'- ---cCGUCGAGCGUGAggccgGCgucGGCGUGCc -3'
miRNA:   3'- cgaaGCGGCUCGCGCU-----CGa--CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 16913 0.7 0.274479
Target:  5'- --gUCGCUcuauGAGCGCucgcaucggaucGAGCUGccGCGCGCa -3'
miRNA:   3'- cgaAGCGG----CUCGCG------------CUCGAC--CGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.