miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24965 3' -60.4 NC_005284.1 + 49372 1.12 0.000203
Target:  5'- aGCUUCGCCGAGCGCGAGCUGGCGCGCc -3'
miRNA:   3'- -CGAAGCGGCUCGCGCUCGACCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 44874 0.81 0.039298
Target:  5'- cGCUgcuGCgCGAGCGCGAGCgacgcuucGGCGCGCu -3'
miRNA:   3'- -CGAag-CG-GCUCGCGCUCGa-------CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 36303 0.81 0.039298
Target:  5'- ---aCGCCGAGCGCGuuCUcGGCGCGCa -3'
miRNA:   3'- cgaaGCGGCUCGCGCucGA-CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 46034 0.75 0.107223
Target:  5'- --gUCGCCGGGCGuCGAGCaGGCcucgacggcaaGCGCu -3'
miRNA:   3'- cgaAGCGGCUCGC-GCUCGaCCG-----------CGCG- -5'
24965 3' -60.4 NC_005284.1 + 19035 0.75 0.110186
Target:  5'- --aUCGCCGAGgGCGAuaUGGCGguCGCg -3'
miRNA:   3'- cgaAGCGGCUCgCGCUcgACCGC--GCG- -5'
24965 3' -60.4 NC_005284.1 + 6815 0.74 0.12963
Target:  5'- gGCgagGCCGAGgGggcgauucgcacCGAGUUGGCGCGCg -3'
miRNA:   3'- -CGaagCGGCUCgC------------GCUCGACCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 44973 0.74 0.144306
Target:  5'- uGCgcgCGCCGAuuuccugacuGCcgGCGAcGUUGGCGCGCg -3'
miRNA:   3'- -CGaa-GCGGCU----------CG--CGCU-CGACCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 9744 0.74 0.148205
Target:  5'- aGCUU-GCCGaAGCGCGGGCggucgaGGCgacgGCGCa -3'
miRNA:   3'- -CGAAgCGGC-UCGCGCUCGa-----CCG----CGCG- -5'
24965 3' -60.4 NC_005284.1 + 45867 0.73 0.151797
Target:  5'- uGCUaCGUgGAGCGCGAagccacuGCUGcCGCGCa -3'
miRNA:   3'- -CGAaGCGgCUCGCGCU-------CGACcGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 46465 0.73 0.152201
Target:  5'- ---cCGCCGAGCGUccGAcGCUGGCGUuaGCu -3'
miRNA:   3'- cgaaGCGGCUCGCG--CU-CGACCGCG--CG- -5'
24965 3' -60.4 NC_005284.1 + 9792 0.73 0.164778
Target:  5'- cGCUUC-CUGaAGCGUGAGCUuGUGCGUa -3'
miRNA:   3'- -CGAAGcGGC-UCGCGCUCGAcCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 45191 0.73 0.16873
Target:  5'- aGCUUCGCCGccgcggcAGCGCGAucGCccugcgcuuUGGCgaGCGCu -3'
miRNA:   3'- -CGAAGCGGC-------UCGCGCU--CG---------ACCG--CGCG- -5'
24965 3' -60.4 NC_005284.1 + 18038 0.73 0.169174
Target:  5'- cGC-UCGCCGAGCGCuucGAcGCcgauccggUGGCGgGCg -3'
miRNA:   3'- -CGaAGCGGCUCGCG---CU-CG--------ACCGCgCG- -5'
24965 3' -60.4 NC_005284.1 + 38954 0.72 0.177817
Target:  5'- aCUUCGUCGAccuucguGCGCGAuGCUGauccgcgggcuGCGCGCu -3'
miRNA:   3'- cGAAGCGGCU-------CGCGCU-CGAC-----------CGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 10642 0.72 0.178282
Target:  5'- aGCggCGgCGAagcgcuGCGCGAGgaaCUGGUGCGCg -3'
miRNA:   3'- -CGaaGCgGCU------CGCGCUC---GACCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 33160 0.72 0.182998
Target:  5'- ---aCGCUGcucGGCGuCGAGCgcGGCGCGCg -3'
miRNA:   3'- cgaaGCGGC---UCGC-GCUCGa-CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 15489 0.72 0.19781
Target:  5'- --cUCGCCGAGCGCG-GCgu-CGCGUu -3'
miRNA:   3'- cgaAGCGGCUCGCGCuCGaccGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 53353 0.71 0.206661
Target:  5'- cGCUUCGCC-AGCGCaGugacguauccugcuAGCUGuGCGCGg -3'
miRNA:   3'- -CGAAGCGGcUCGCG-C--------------UCGAC-CGCGCg -5'
24965 3' -60.4 NC_005284.1 + 21842 0.71 0.208258
Target:  5'- aGCgcCGCCG-GCGUGGGCgaUGGUGcCGCc -3'
miRNA:   3'- -CGaaGCGGCuCGCGCUCG--ACCGC-GCG- -5'
24965 3' -60.4 NC_005284.1 + 20831 0.71 0.213658
Target:  5'- aGCagCGCCGGcCGaCGAGCgGGCgGCGCu -3'
miRNA:   3'- -CGaaGCGGCUcGC-GCUCGaCCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.