miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24965 3' -60.4 NC_005284.1 + 51460 0.69 0.295251
Target:  5'- aGCUgauggaCGUCGAGCGaUGGGCggugaucGCGCGCu -3'
miRNA:   3'- -CGAa-----GCGGCUCGC-GCUCGac-----CGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 21842 0.71 0.208258
Target:  5'- aGCgcCGCCG-GCGUGGGCgaUGGUGcCGCc -3'
miRNA:   3'- -CGaaGCGGCuCGCGCUCG--ACCGC-GCG- -5'
24965 3' -60.4 NC_005284.1 + 41610 0.71 0.236472
Target:  5'- gGCcgCGCCGAGUGCGAGCUccGaCaCGCa -3'
miRNA:   3'- -CGaaGCGGCUCGCGCUCGA--CcGcGCG- -5'
24965 3' -60.4 NC_005284.1 + 12038 0.71 0.236472
Target:  5'- --aUCGCCGAccucGCGCG-GUUuucGGCGCGUg -3'
miRNA:   3'- cgaAGCGGCU----CGCGCuCGA---CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 9359 0.7 0.261293
Target:  5'- ---gCGaCGGGCGCGAGCgcgaGGCuuGCGCa -3'
miRNA:   3'- cgaaGCgGCUCGCGCUCGa---CCG--CGCG- -5'
24965 3' -60.4 NC_005284.1 + 48463 0.7 0.261293
Target:  5'- aGCUUCGCCGgaugcAGCaGuCGGGCUGGCuaauacucgugaGCGa -3'
miRNA:   3'- -CGAAGCGGC-----UCG-C-GCUCGACCG------------CGCg -5'
24965 3' -60.4 NC_005284.1 + 16913 0.7 0.274479
Target:  5'- --gUCGCUcuauGAGCGCucgcaucggaucGAGCUGccGCGCGCa -3'
miRNA:   3'- cgaAGCGG----CUCGCG------------CUCGAC--CGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 16675 0.69 0.28127
Target:  5'- ---cCGUCGAGCGUGAggccgGCgucGGCGUGCc -3'
miRNA:   3'- cgaaGCGGCUCGCGCU-----CGa--CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 21633 0.69 0.288194
Target:  5'- cGCUcgaCGCCGAGCaGCGuGCgaucGCcGCGCa -3'
miRNA:   3'- -CGAa--GCGGCUCG-CGCuCGac--CG-CGCG- -5'
24965 3' -60.4 NC_005284.1 + 53353 0.71 0.206661
Target:  5'- cGCUUCGCC-AGCGCaGugacguauccugcuAGCUGuGCGCGg -3'
miRNA:   3'- -CGAAGCGGcUCGCG-C--------------UCGAC-CGCGCg -5'
24965 3' -60.4 NC_005284.1 + 15489 0.72 0.19781
Target:  5'- --cUCGCCGAGCGCG-GCgu-CGCGUu -3'
miRNA:   3'- cgaAGCGGCUCGCGCuCGaccGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 10642 0.72 0.178282
Target:  5'- aGCggCGgCGAagcgcuGCGCGAGgaaCUGGUGCGCg -3'
miRNA:   3'- -CGaaGCgGCU------CGCGCUC---GACCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 46034 0.75 0.107223
Target:  5'- --gUCGCCGGGCGuCGAGCaGGCcucgacggcaaGCGCu -3'
miRNA:   3'- cgaAGCGGCUCGC-GCUCGaCCG-----------CGCG- -5'
24965 3' -60.4 NC_005284.1 + 19035 0.75 0.110186
Target:  5'- --aUCGCCGAGgGCGAuaUGGCGguCGCg -3'
miRNA:   3'- cgaAGCGGCUCgCGCUcgACCGC--GCG- -5'
24965 3' -60.4 NC_005284.1 + 6815 0.74 0.12963
Target:  5'- gGCgagGCCGAGgGggcgauucgcacCGAGUUGGCGCGCg -3'
miRNA:   3'- -CGaagCGGCUCgC------------GCUCGACCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 9744 0.74 0.148205
Target:  5'- aGCUU-GCCGaAGCGCGGGCggucgaGGCgacgGCGCa -3'
miRNA:   3'- -CGAAgCGGC-UCGCGCUCGa-----CCG----CGCG- -5'
24965 3' -60.4 NC_005284.1 + 45867 0.73 0.151797
Target:  5'- uGCUaCGUgGAGCGCGAagccacuGCUGcCGCGCa -3'
miRNA:   3'- -CGAaGCGgCUCGCGCU-------CGACcGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 46465 0.73 0.152201
Target:  5'- ---cCGCCGAGCGUccGAcGCUGGCGUuaGCu -3'
miRNA:   3'- cgaaGCGGCUCGCG--CU-CGACCGCG--CG- -5'
24965 3' -60.4 NC_005284.1 + 18038 0.73 0.169174
Target:  5'- cGC-UCGCCGAGCGCuucGAcGCcgauccggUGGCGgGCg -3'
miRNA:   3'- -CGaAGCGGCUCGCG---CU-CG--------ACCGCgCG- -5'
24965 3' -60.4 NC_005284.1 + 38954 0.72 0.177817
Target:  5'- aCUUCGUCGAccuucguGCGCGAuGCUGauccgcgggcuGCGCGCu -3'
miRNA:   3'- cGAAGCGGCU-------CGCGCU-CGAC-----------CGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.