Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24967 | 5' | -57.1 | NC_005284.1 | + | 50221 | 1.08 | 0.000597 |
Target: 5'- aAGCCGCAUUCGCCGUUCAGCAGCCUGa -3' miRNA: 3'- -UCGGCGUAAGCGGCAAGUCGUCGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 4111 | 0.75 | 0.171899 |
Target: 5'- uGGCCGCGguuaUCGCCaaUC-GCGGCCUGa -3' miRNA: 3'- -UCGGCGUa---AGCGGcaAGuCGUCGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 46223 | 0.73 | 0.242458 |
Target: 5'- cGGUCGUAUUCGCCGUaacgcugacgaUCAGCucgcgaaGGCUUGu -3' miRNA: 3'- -UCGGCGUAAGCGGCA-----------AGUCG-------UCGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 42796 | 0.71 | 0.305642 |
Target: 5'- cGCCgGCAUUCuaCGUgauagCAGCGGCCa- -3' miRNA: 3'- uCGG-CGUAAGcgGCAa----GUCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 14965 | 0.7 | 0.345415 |
Target: 5'- --aCGCg--CGCCGUUCGGCGGCUUc -3' miRNA: 3'- ucgGCGuaaGCGGCAAGUCGUCGGAc -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 33479 | 0.7 | 0.362333 |
Target: 5'- cGcCCGCAUugaaccgccUCGCCGUUguGCuGCCg- -3' miRNA: 3'- uC-GGCGUA---------AGCGGCAAguCGuCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 41413 | 0.69 | 0.397857 |
Target: 5'- cGCCGCAgacagaUCGCCGcccaccgUCAGCuuGCCg- -3' miRNA: 3'- uCGGCGUa-----AGCGGCa------AGUCGu-CGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 35597 | 0.69 | 0.397857 |
Target: 5'- cGGCCGCGUU-GUCGUUCAcCuucGCCUGu -3' miRNA: 3'- -UCGGCGUAAgCGGCAAGUcGu--CGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 4690 | 0.69 | 0.397857 |
Target: 5'- cGCCGCGUUacguucucgaUGCUGUUCGGCuGCUc- -3' miRNA: 3'- uCGGCGUAA----------GCGGCAAGUCGuCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 54521 | 0.69 | 0.425925 |
Target: 5'- aGGCagCGCAUcuugCGCCGcgaCAGCGGCCUc -3' miRNA: 3'- -UCG--GCGUAa---GCGGCaa-GUCGUCGGAc -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 15964 | 0.69 | 0.425925 |
Target: 5'- cGGCCcaCGUUCGCCGUguUCAaCGGCCg- -3' miRNA: 3'- -UCGGc-GUAAGCGGCA--AGUcGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 38551 | 0.68 | 0.445278 |
Target: 5'- uGCCGuUGUUCGCCGUccccgcgaGGCcGGCCUGu -3' miRNA: 3'- uCGGC-GUAAGCGGCAag------UCG-UCGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 21779 | 0.68 | 0.445278 |
Target: 5'- cGGCUGCGcgUCGCUGUccgacacugcaCGGCAGCCg- -3' miRNA: 3'- -UCGGCGUa-AGCGGCAa----------GUCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 6757 | 0.68 | 0.458118 |
Target: 5'- cGGCaCGCAgcacaugaaggcucaGCCGUUCAuGCGGCCg- -3' miRNA: 3'- -UCG-GCGUaag------------CGGCAAGU-CGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 41532 | 0.68 | 0.472165 |
Target: 5'- cGCCgGCAUUCaGCaCGUUCAGUugagacaggucgccGGCUUGa -3' miRNA: 3'- uCGG-CGUAAG-CG-GCAAGUCG--------------UCGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 44164 | 0.68 | 0.475203 |
Target: 5'- cGCCGCucgUCGCCGacacgaAGCGGUCg- -3' miRNA: 3'- uCGGCGua-AGCGGCaag---UCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 46031 | 0.67 | 0.485399 |
Target: 5'- cGCCGaa--CGCCGcugCGGCGGCUUGu -3' miRNA: 3'- uCGGCguaaGCGGCaa-GUCGUCGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 5699 | 0.67 | 0.495699 |
Target: 5'- cGCCGgAUUCGCaCGU--GGCAGCUc- -3' miRNA: 3'- uCGGCgUAAGCG-GCAagUCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 14488 | 0.67 | 0.501926 |
Target: 5'- aGGCCGCGggcUUCGagcagacauccgaCGcgCAGCAGCCa- -3' miRNA: 3'- -UCGGCGU---AAGCg------------GCaaGUCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 37383 | 0.67 | 0.505053 |
Target: 5'- cGCCGCGgucgUCGCCGUagcguugcaccuUCAcaccgacGUAGCCg- -3' miRNA: 3'- uCGGCGUa---AGCGGCA------------AGU-------CGUCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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