Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24967 | 5' | -57.1 | NC_005284.1 | + | 50221 | 1.08 | 0.000597 |
Target: 5'- aAGCCGCAUUCGCCGUUCAGCAGCCUGa -3' miRNA: 3'- -UCGGCGUAAGCGGCAAGUCGUCGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 48442 | 0.66 | 0.574552 |
Target: 5'- cGCCGCguGcagugcaguaccagcUUCGCCGgaugCAGCAGUCg- -3' miRNA: 3'- uCGGCG--U---------------AAGCGGCaa--GUCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 16043 | 0.67 | 0.537818 |
Target: 5'- -uCCGCAUUgCGCCGguaaucgUCGGCAGUa-- -3' miRNA: 3'- ucGGCGUAA-GCGGCa------AGUCGUCGgac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 50299 | 0.67 | 0.515534 |
Target: 5'- cGGCCGaCcgUCGCCGaggguucgaaguaUUUGGCGGCgUGc -3' miRNA: 3'- -UCGGC-GuaAGCGGC-------------AAGUCGUCGgAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 18093 | 0.67 | 0.506097 |
Target: 5'- aAGCCGCGagcUCGCgGcgCAGCAGUa-- -3' miRNA: 3'- -UCGGCGUa--AGCGgCaaGUCGUCGgac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 37383 | 0.67 | 0.505053 |
Target: 5'- cGCCGCGgucgUCGCCGUagcguugcaccuUCAcaccgacGUAGCCg- -3' miRNA: 3'- uCGGCGUa---AGCGGCA------------AGU-------CGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 14488 | 0.67 | 0.501926 |
Target: 5'- aGGCCGCGggcUUCGagcagacauccgaCGcgCAGCAGCCa- -3' miRNA: 3'- -UCGGCGU---AAGCg------------GCaaGUCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 5699 | 0.67 | 0.495699 |
Target: 5'- cGCCGgAUUCGCaCGU--GGCAGCUc- -3' miRNA: 3'- uCGGCgUAAGCG-GCAagUCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 6757 | 0.68 | 0.458118 |
Target: 5'- cGGCaCGCAgcacaugaaggcucaGCCGUUCAuGCGGCCg- -3' miRNA: 3'- -UCG-GCGUaag------------CGGCAAGU-CGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 4111 | 0.75 | 0.171899 |
Target: 5'- uGGCCGCGguuaUCGCCaaUC-GCGGCCUGa -3' miRNA: 3'- -UCGGCGUa---AGCGGcaAGuCGUCGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 42796 | 0.71 | 0.305642 |
Target: 5'- cGCCgGCAUUCuaCGUgauagCAGCGGCCa- -3' miRNA: 3'- uCGG-CGUAAGcgGCAa----GUCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 14965 | 0.7 | 0.345415 |
Target: 5'- --aCGCg--CGCCGUUCGGCGGCUUc -3' miRNA: 3'- ucgGCGuaaGCGGCAAGUCGUCGGAc -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 54521 | 0.69 | 0.425925 |
Target: 5'- aGGCagCGCAUcuugCGCCGcgaCAGCGGCCUc -3' miRNA: 3'- -UCG--GCGUAa---GCGGCaa-GUCGUCGGAc -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 15964 | 0.69 | 0.425925 |
Target: 5'- cGGCCcaCGUUCGCCGUguUCAaCGGCCg- -3' miRNA: 3'- -UCGGc-GUAAGCGGCA--AGUcGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 21779 | 0.68 | 0.445278 |
Target: 5'- cGGCUGCGcgUCGCUGUccgacacugcaCGGCAGCCg- -3' miRNA: 3'- -UCGGCGUa-AGCGGCAa----------GUCGUCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 46223 | 0.73 | 0.242458 |
Target: 5'- cGGUCGUAUUCGCCGUaacgcugacgaUCAGCucgcgaaGGCUUGu -3' miRNA: 3'- -UCGGCGUAAGCGGCA-----------AGUCG-------UCGGAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 13783 | 0.66 | 0.570196 |
Target: 5'- -uCCGCGacgaUCGCCGUUCcAGCAauGCCg- -3' miRNA: 3'- ucGGCGUa---AGCGGCAAG-UCGU--CGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 33253 | 0.66 | 0.570196 |
Target: 5'- aAGCCGaugugCGCCGaUCAGguGCUc- -3' miRNA: 3'- -UCGGCguaa-GCGGCaAGUCguCGGac -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 48372 | 0.66 | 0.559343 |
Target: 5'- aAGUCGaCAUagccUUGCCGgcgaUUCGGCAGCaCUGc -3' miRNA: 3'- -UCGGC-GUA----AGCGGC----AAGUCGUCG-GAC- -5' |
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24967 | 5' | -57.1 | NC_005284.1 | + | 7091 | 0.66 | 0.559343 |
Target: 5'- gAGCgCGCGUgcccuuccUUGCCG-UCAGCGGCa-- -3' miRNA: 3'- -UCG-GCGUA--------AGCGGCaAGUCGUCGgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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