miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24968 3' -55.4 NC_005284.1 + 51658 1.07 0.001367
Target:  5'- uGAAUCACGCGCGCGCGACGAUCAGCUu -3'
miRNA:   3'- -CUUAGUGCGCGCGCGCUGCUAGUCGA- -5'
24968 3' -55.4 NC_005284.1 + 7883 0.78 0.148966
Target:  5'- aGAUCGCaGUGCGCGagcCGACGGUCGGCg -3'
miRNA:   3'- cUUAGUG-CGCGCGC---GCUGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 49339 0.77 0.176091
Target:  5'- ---gCACGCGUGCGCGACGAccgaacuaucggucgCAGCUu -3'
miRNA:   3'- cuuaGUGCGCGCGCGCUGCUa--------------GUCGA- -5'
24968 3' -55.4 NC_005284.1 + 31627 0.76 0.200979
Target:  5'- ----aACGCGC-CGCGACGAUCGGUg -3'
miRNA:   3'- cuuagUGCGCGcGCGCUGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 9235 0.74 0.254659
Target:  5'- cGAggCGCuGaCGCGCGCGGCGggCGGCa -3'
miRNA:   3'- -CUuaGUG-C-GCGCGCGCUGCuaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 22022 0.74 0.281359
Target:  5'- aGAggCGCGCGaGCGCGACGAUCcugaacugaucgcGGCa -3'
miRNA:   3'- -CUuaGUGCGCgCGCGCUGCUAG-------------UCGa -5'
24968 3' -55.4 NC_005284.1 + 6844 0.74 0.289281
Target:  5'- ---gUugGCGCGCGCGAuCGAUCGuguGCUc -3'
miRNA:   3'- cuuaGugCGCGCGCGCU-GCUAGU---CGA- -5'
24968 3' -55.4 NC_005284.1 + 30139 0.72 0.342961
Target:  5'- ---gCACGcCGCGCGCGAcugaagaCGGUCAGUUc -3'
miRNA:   3'- cuuaGUGC-GCGCGCGCU-------GCUAGUCGA- -5'
24968 3' -55.4 NC_005284.1 + 4622 0.72 0.360663
Target:  5'- ----aACGUGCcUGCGACGGUCGGCa -3'
miRNA:   3'- cuuagUGCGCGcGCGCUGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 3135 0.72 0.369314
Target:  5'- -cGUCGCGCGCGCGUGAuucacauacagcCGAgcaAGCa -3'
miRNA:   3'- cuUAGUGCGCGCGCGCU------------GCUag-UCGa -5'
24968 3' -55.4 NC_005284.1 + 7495 0.71 0.386137
Target:  5'- --cUCGCGCGCGUugaucacGCGGCGA-CGGCc -3'
miRNA:   3'- cuuAGUGCGCGCG-------CGCUGCUaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 24860 0.71 0.396105
Target:  5'- --uUCGCGCaaccuGCGCGaCGugGAUCGGUc -3'
miRNA:   3'- cuuAGUGCG-----CGCGC-GCugCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 22764 0.71 0.396105
Target:  5'- cGAUCAagGgGCGCGCGAUcGUCAGCc -3'
miRNA:   3'- cUUAGUg-CgCGCGCGCUGcUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 11818 0.71 0.40531
Target:  5'- aGGUCGCGCGCgaGCGCGGCuAUCucgAGCa -3'
miRNA:   3'- cUUAGUGCGCG--CGCGCUGcUAG---UCGa -5'
24968 3' -55.4 NC_005284.1 + 19488 0.71 0.40531
Target:  5'- uGGAUCACGaa--CGCGAUGAUCGGCa -3'
miRNA:   3'- -CUUAGUGCgcgcGCGCUGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 22877 0.71 0.40531
Target:  5'- cGAAUaACGaCGCGC-UGACGGUCGGCg -3'
miRNA:   3'- -CUUAgUGC-GCGCGcGCUGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 21911 0.71 0.414649
Target:  5'- --uUCG-GCGuCGCcgGCGACGAUCAGCg -3'
miRNA:   3'- cuuAGUgCGC-GCG--CGCUGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 41965 0.71 0.414649
Target:  5'- aGAGUC-CGCGgGCGCGaaGCGG-CGGCg -3'
miRNA:   3'- -CUUAGuGCGCgCGCGC--UGCUaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 8704 0.71 0.424118
Target:  5'- aGGUCACgGUGCGCGCGcuCGAcgCGGCg -3'
miRNA:   3'- cUUAGUG-CGCGCGCGCu-GCUa-GUCGa -5'
24968 3' -55.4 NC_005284.1 + 30421 0.7 0.433716
Target:  5'- ---cCGCGUGCGCGaCGGCGAgguGCUg -3'
miRNA:   3'- cuuaGUGCGCGCGC-GCUGCUaguCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.