miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24968 3' -55.4 NC_005284.1 + 1219 0.66 0.689095
Target:  5'- ---gCAUGgGCGCGCGcCGG-CAGCc -3'
miRNA:   3'- cuuaGUGCgCGCGCGCuGCUaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 1391 0.66 0.699962
Target:  5'- cGAUC-CGCGCGUGCuGGCGAa-AGCc -3'
miRNA:   3'- cUUAGuGCGCGCGCG-CUGCUagUCGa -5'
24968 3' -55.4 NC_005284.1 + 3135 0.72 0.369314
Target:  5'- -cGUCGCGCGCGCGUGAuucacauacagcCGAgcaAGCa -3'
miRNA:   3'- cuUAGUGCGCGCGCGCU------------GCUag-UCGa -5'
24968 3' -55.4 NC_005284.1 + 4622 0.72 0.360663
Target:  5'- ----aACGUGCcUGCGACGGUCGGCa -3'
miRNA:   3'- cuuagUGCGCGcGCGCUGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 6844 0.74 0.289281
Target:  5'- ---gUugGCGCGCGCGAuCGAUCGuguGCUc -3'
miRNA:   3'- cuuaGugCGCGCGCGCU-GCUAGU---CGA- -5'
24968 3' -55.4 NC_005284.1 + 7495 0.71 0.386137
Target:  5'- --cUCGCGCGCGUugaucacGCGGCGA-CGGCc -3'
miRNA:   3'- cuuAGUGCGCGCG-------CGCUGCUaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 7883 0.78 0.148966
Target:  5'- aGAUCGCaGUGCGCGagcCGACGGUCGGCg -3'
miRNA:   3'- cUUAGUG-CGCGCGC---GCUGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 7992 0.69 0.514661
Target:  5'- --uUCGCGCGCGCGaguGACGA-CGcGCa -3'
miRNA:   3'- cuuAGUGCGCGCGCg--CUGCUaGU-CGa -5'
24968 3' -55.4 NC_005284.1 + 8704 0.71 0.424118
Target:  5'- aGGUCACgGUGCGCGCGcuCGAcgCGGCg -3'
miRNA:   3'- cUUAGUG-CGCGCGCGCu-GCUa-GUCGa -5'
24968 3' -55.4 NC_005284.1 + 9142 0.66 0.710763
Target:  5'- -uGUCGCGgaugcuauCGCGCGCGGC-AUgGGCa -3'
miRNA:   3'- cuUAGUGC--------GCGCGCGCUGcUAgUCGa -5'
24968 3' -55.4 NC_005284.1 + 9235 0.74 0.254659
Target:  5'- cGAggCGCuGaCGCGCGCGGCGggCGGCa -3'
miRNA:   3'- -CUuaGUG-C-GCGCGCGCUGCuaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 9492 0.7 0.443439
Target:  5'- cGAcgCAgGCgGCGacaGCGugGGUCGGCg -3'
miRNA:   3'- -CUuaGUgCG-CGCg--CGCugCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 9595 0.68 0.590096
Target:  5'- cGAUCGCGCuGC-CGCGGCGGcgaAGCUu -3'
miRNA:   3'- cUUAGUGCG-CGcGCGCUGCUag-UCGA- -5'
24968 3' -55.4 NC_005284.1 + 9626 0.66 0.667206
Target:  5'- ----aACGCGCaaGCGGCGGaggcuUCAGCg -3'
miRNA:   3'- cuuagUGCGCGcgCGCUGCU-----AGUCGa -5'
24968 3' -55.4 NC_005284.1 + 9838 0.66 0.678173
Target:  5'- -cAUCACGgGCacgcccuaCGCGGCGAUCAucGCUc -3'
miRNA:   3'- cuUAGUGCgCGc-------GCGCUGCUAGU--CGA- -5'
24968 3' -55.4 NC_005284.1 + 11055 0.66 0.667206
Target:  5'- ---aCGCGCGagcuCGCGCuGAUGaAUCAGCa -3'
miRNA:   3'- cuuaGUGCGC----GCGCG-CUGC-UAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 11337 0.7 0.443439
Target:  5'- cGGAUCGCGCaacuGCGCGUcgaGGCGGUC-GCa -3'
miRNA:   3'- -CUUAGUGCG----CGCGCG---CUGCUAGuCGa -5'
24968 3' -55.4 NC_005284.1 + 11818 0.71 0.40531
Target:  5'- aGGUCGCGCGCgaGCGCGGCuAUCucgAGCa -3'
miRNA:   3'- cUUAGUGCGCG--CGCGCUGcUAG---UCGa -5'
24968 3' -55.4 NC_005284.1 + 12058 0.68 0.601079
Target:  5'- --uUCG-GCGCGUGCGGCGAugucUCAGgUg -3'
miRNA:   3'- cuuAGUgCGCGCGCGCUGCU----AGUCgA- -5'
24968 3' -55.4 NC_005284.1 + 12133 0.68 0.572601
Target:  5'- -cGUCgGCGCGCucgguggugcggcaaGCGCGGCuGUCGGCUc -3'
miRNA:   3'- cuUAG-UGCGCG---------------CGCGCUGcUAGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.