miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24968 5' -56.5 NC_005284.1 + 457 0.66 0.645186
Target:  5'- gCGAGCcgGCAGcgccuggUCGGCGCaaAGCCGa- -3'
miRNA:   3'- -GCUCG--CGUCaa-----AGCCGCGc-UCGGUau -5'
24968 5' -56.5 NC_005284.1 + 44883 0.66 0.612089
Target:  5'- gCGAGCGCgAGcgacgcUUCGGCGCgcuGAGCUc-- -3'
miRNA:   3'- -GCUCGCG-UCa-----AAGCCGCG---CUCGGuau -5'
24968 5' -56.5 NC_005284.1 + 39497 0.66 0.609886
Target:  5'- gCGGGCGCGGUUggucagugcaugUGGUGCucGCCGc- -3'
miRNA:   3'- -GCUCGCGUCAAa-----------GCCGCGcuCGGUau -5'
24968 5' -56.5 NC_005284.1 + 29740 0.67 0.579149
Target:  5'- gGGGCGCcgaacAGcacCGGCGCGAGCgGg- -3'
miRNA:   3'- gCUCGCG-----UCaaaGCCGCGCUCGgUau -5'
24968 5' -56.5 NC_005284.1 + 4773 0.67 0.546602
Target:  5'- uGAGCaagcaGCGGUacgUCguggGGCGCGAGCCu-- -3'
miRNA:   3'- gCUCG-----CGUCAa--AG----CCGCGCUCGGuau -5'
24968 5' -56.5 NC_005284.1 + 36306 0.67 0.535878
Target:  5'- cCGAGCGC-GUUcUCGGCGCGcacCCGc- -3'
miRNA:   3'- -GCUCGCGuCAA-AGCCGCGCuc-GGUau -5'
24968 5' -56.5 NC_005284.1 + 19402 0.68 0.492759
Target:  5'- aCGAGgGCGGUgcaGGCGUGAucggcgcGCCGUu -3'
miRNA:   3'- -GCUCgCGUCAaagCCGCGCU-------CGGUAu -5'
24968 5' -56.5 NC_005284.1 + 16122 0.68 0.48248
Target:  5'- -uGGCGCGGUggcgacgUUCGGUuucGCGcAGCCGUGg -3'
miRNA:   3'- gcUCGCGUCA-------AAGCCG---CGC-UCGGUAU- -5'
24968 5' -56.5 NC_005284.1 + 12049 0.7 0.360663
Target:  5'- --cGCGCGGuUUUCGGCGCGugcGGCgAUGu -3'
miRNA:   3'- gcuCGCGUC-AAAGCCGCGC---UCGgUAU- -5'
24968 5' -56.5 NC_005284.1 + 43618 0.72 0.289281
Target:  5'- cCGcGCGCGGcggccgCGGCGCGAGCUg-- -3'
miRNA:   3'- -GCuCGCGUCaaa---GCCGCGCUCGGuau -5'
24968 5' -56.5 NC_005284.1 + 25668 0.74 0.229471
Target:  5'- -cGGCGCAGccgUUC-GCGCGAGCCAa- -3'
miRNA:   3'- gcUCGCGUCa--AAGcCGCGCUCGGUau -5'
24968 5' -56.5 NC_005284.1 + 51694 1.06 0.001013
Target:  5'- uCGAGCGCAGUUUCGGCGCGAGCCAUAu -3'
miRNA:   3'- -GCUCGCGUCAAAGCCGCGCUCGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.