miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24969 5' -51.4 NC_005284.1 + 15928 0.66 0.89824
Target:  5'- --cGGCUUUCCggcguuccugacgUCGGCGCGcgacgCCgGCc -3'
miRNA:   3'- cuaCCGAAAGG-------------AGCUGCGUua---GGaCG- -5'
24969 5' -51.4 NC_005284.1 + 43625 0.66 0.876203
Target:  5'- --cGGCgg-CCgCGGCGCGAg-CUGCg -3'
miRNA:   3'- cuaCCGaaaGGaGCUGCGUUagGACG- -5'
24969 5' -51.4 NC_005284.1 + 25307 0.66 0.872982
Target:  5'- --gGGCgUUCCcugCGucaacuacuuaacCGCAGUCCUGCu -3'
miRNA:   3'- cuaCCGaAAGGa--GCu------------GCGUUAGGACG- -5'
24969 5' -51.4 NC_005284.1 + 40572 0.66 0.868071
Target:  5'- ---uGUUUUCUUCGACGCAG-CC-GCa -3'
miRNA:   3'- cuacCGAAAGGAGCUGCGUUaGGaCG- -5'
24969 5' -51.4 NC_005284.1 + 10484 0.66 0.868071
Target:  5'- cAUGGCagUUUCUUCGACGUAgagGUUC-GCg -3'
miRNA:   3'- cUACCG--AAAGGAGCUGCGU---UAGGaCG- -5'
24969 5' -51.4 NC_005284.1 + 34222 0.67 0.851029
Target:  5'- --cGGCUUUCgaUUCGuucuGCGCcgucgauGUCCUGCg -3'
miRNA:   3'- cuaCCGAAAG--GAGC----UGCGu------UAGGACG- -5'
24969 5' -51.4 NC_005284.1 + 14587 0.67 0.851029
Target:  5'- -uUGGCgaucUCgUCGGCGCGAaaguguUCCgGCg -3'
miRNA:   3'- cuACCGaa--AGgAGCUGCGUU------AGGaCG- -5'
24969 5' -51.4 NC_005284.1 + 43368 0.67 0.842136
Target:  5'- --cGGUUUUCgcgaUCGACGCAgcgcgucaaGUCCcGCg -3'
miRNA:   3'- cuaCCGAAAGg---AGCUGCGU---------UAGGaCG- -5'
24969 5' -51.4 NC_005284.1 + 28436 0.67 0.842136
Target:  5'- -uUGGCagUCUuaGACGCAggUCUGCc -3'
miRNA:   3'- cuACCGaaAGGagCUGCGUuaGGACG- -5'
24969 5' -51.4 NC_005284.1 + 50923 0.67 0.823653
Target:  5'- uGAUGGCcuuugccuucaUUCCgCGAuaCGCGAUCCUuGCg -3'
miRNA:   3'- -CUACCGa----------AAGGaGCU--GCGUUAGGA-CG- -5'
24969 5' -51.4 NC_005284.1 + 53346 0.68 0.772838
Target:  5'- --cGGCUgucgCUUCGccaGCGCAgugacguAUCCUGCu -3'
miRNA:   3'- cuaCCGAaa--GGAGC---UGCGU-------UAGGACG- -5'
24969 5' -51.4 NC_005284.1 + 30688 0.69 0.720202
Target:  5'- --cGGCUUUCUUgcCGACGCGc-UCUGCa -3'
miRNA:   3'- cuaCCGAAAGGA--GCUGCGUuaGGACG- -5'
24969 5' -51.4 NC_005284.1 + 420 0.7 0.675504
Target:  5'- aAUGGCgagUUUCGGCGCAAUgCUGg -3'
miRNA:   3'- cUACCGaaaGGAGCUGCGUUAgGACg -5'
24969 5' -51.4 NC_005284.1 + 48195 0.72 0.573455
Target:  5'- --cGGUUUUCUUCGGCGCGcgCUUacGCg -3'
miRNA:   3'- cuaCCGAAAGGAGCUGCGUuaGGA--CG- -5'
24969 5' -51.4 NC_005284.1 + 36653 0.73 0.528998
Target:  5'- -cUGGCcgUCgUCGuCGCuuUCCUGCa -3'
miRNA:   3'- cuACCGaaAGgAGCuGCGuuAGGACG- -5'
24969 5' -51.4 NC_005284.1 + 16031 0.73 0.507242
Target:  5'- --cGGacauugCCUCGACGCAAUCgaGCu -3'
miRNA:   3'- cuaCCgaaa--GGAGCUGCGUUAGgaCG- -5'
24969 5' -51.4 NC_005284.1 + 52947 1.12 0.001502
Target:  5'- cGAUGGCUUUCCUCGACGCAAUCCUGCc -3'
miRNA:   3'- -CUACCGAAAGGAGCUGCGUUAGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.