miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24971 3' -55.1 NC_005284.1 + 54423 1.09 0.001023
Target:  5'- aCUGCGAUCAACAUGCGCACGAGGCCGu -3'
miRNA:   3'- -GACGCUAGUUGUACGCGUGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 41584 0.81 0.105072
Target:  5'- aUGCaaacAUCAACGUacGCGCGCGAGGCCGc -3'
miRNA:   3'- gACGc---UAGUUGUA--CGCGUGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 15824 0.79 0.128024
Target:  5'- -cGCgGAUCAGCAUcGCGCACGAaGGUCGa -3'
miRNA:   3'- gaCG-CUAGUUGUA-CGCGUGCU-CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 46666 0.74 0.279203
Target:  5'- aUGCGGU-----UGUGCACGGGGCCGa -3'
miRNA:   3'- gACGCUAguuguACGCGUGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 18207 0.74 0.286364
Target:  5'- -gGCGAUCGACGacgGCGCACaGAuucagcaacGGCCGa -3'
miRNA:   3'- gaCGCUAGUUGUa--CGCGUG-CU---------CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 20678 0.74 0.289269
Target:  5'- -gGCGAUCGGCGUGCaguuuuacggugucgGCACGGaaccgggggcGGCCGa -3'
miRNA:   3'- gaCGCUAGUUGUACG---------------CGUGCU----------CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 22025 0.72 0.348868
Target:  5'- -gGCGAcCGGCGUGCGUGCGGGaacacgcauGCCGg -3'
miRNA:   3'- gaCGCUaGUUGUACGCGUGCUC---------CGGC- -5'
24971 3' -55.1 NC_005284.1 + 6788 0.72 0.357333
Target:  5'- aUGCGGcCGGCGuuugaUGCGUcgaucgGCGAGGCCGa -3'
miRNA:   3'- gACGCUaGUUGU-----ACGCG------UGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 47824 0.72 0.371174
Target:  5'- gCUGCGAugggugcUCGGCAUugacgacgcggaaaGCGCACagGAGGCCa -3'
miRNA:   3'- -GACGCU-------AGUUGUA--------------CGCGUG--CUCCGGc -5'
24971 3' -55.1 NC_005284.1 + 33979 0.72 0.374691
Target:  5'- gCUGCGGgcugcUCGACAggggGUGCgGCGAgGGCCGa -3'
miRNA:   3'- -GACGCU-----AGUUGUa---CGCG-UGCU-CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 49177 0.72 0.39261
Target:  5'- -gGCGAUgGAggaaAUGCuGCGCGAGGCUGc -3'
miRNA:   3'- gaCGCUAgUUg---UACG-CGUGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 21651 0.71 0.401776
Target:  5'- gUGCGAUCGcc--GCGCACGAuGCCGc -3'
miRNA:   3'- gACGCUAGUuguaCGCGUGCUcCGGC- -5'
24971 3' -55.1 NC_005284.1 + 31429 0.71 0.420511
Target:  5'- -cGCGggCGACGUGCGCcgcuGCGGcGcGCCGg -3'
miRNA:   3'- gaCGCuaGUUGUACGCG----UGCU-C-CGGC- -5'
24971 3' -55.1 NC_005284.1 + 17963 0.71 0.439763
Target:  5'- gUGCGAUCGcCAa--GgGCGAGGCCGa -3'
miRNA:   3'- gACGCUAGUuGUacgCgUGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 47713 0.7 0.449576
Target:  5'- -cGCGcgCucGCGUGCGCAgaAGGCCGu -3'
miRNA:   3'- gaCGCuaGu-UGUACGCGUgcUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 16755 0.7 0.469556
Target:  5'- aCUGCGGUgcGCGUGCGCuuCGGuGuGCCGg -3'
miRNA:   3'- -GACGCUAguUGUACGCGu-GCU-C-CGGC- -5'
24971 3' -55.1 NC_005284.1 + 6853 0.7 0.479715
Target:  5'- -cGCGAUCGAuCGUGUGCucgGAGGgCGg -3'
miRNA:   3'- gaCGCUAGUU-GUACGCGug-CUCCgGC- -5'
24971 3' -55.1 NC_005284.1 + 37618 0.7 0.48998
Target:  5'- gUGaCGAUCGACA-GCaGCACGAgaaacagcacGGCCGc -3'
miRNA:   3'- gAC-GCUAGUUGUaCG-CGUGCU----------CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 24390 0.7 0.48998
Target:  5'- -gGaCGAUCGACAUGCcgaccaGCACacgcGGGCCGa -3'
miRNA:   3'- gaC-GCUAGUUGUACG------CGUGc---UCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 16851 0.7 0.500346
Target:  5'- uUGuCGGUCGACGgcgggucguaUGCGCAgGugcuGGCCGg -3'
miRNA:   3'- gAC-GCUAGUUGU----------ACGCGUgCu---CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.