miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24971 3' -55.1 NC_005284.1 + 686 0.68 0.564339
Target:  5'- -gGCGAUUGGCGUGUGUuguACGAaaucgaagauGGCCGc -3'
miRNA:   3'- gaCGCUAGUUGUACGCG---UGCU----------CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 1209 0.66 0.728537
Target:  5'- aUGCuGAcCGGCAUGgGCGCGc-GCCGg -3'
miRNA:   3'- gACG-CUaGUUGUACgCGUGCucCGGC- -5'
24971 3' -55.1 NC_005284.1 + 4039 0.69 0.553493
Target:  5'- gCUGCGAUCAACugGCGCuuaACGGuGGCg- -3'
miRNA:   3'- -GACGCUAGUUGuaCGCG---UGCU-CCGgc -5'
24971 3' -55.1 NC_005284.1 + 5438 0.66 0.70709
Target:  5'- gCUGCGAccgauaguUCGGuCGUcGCGCACGcGuGCCGu -3'
miRNA:   3'- -GACGCU--------AGUU-GUA-CGCGUGCuC-CGGC- -5'
24971 3' -55.1 NC_005284.1 + 6676 0.7 0.500346
Target:  5'- -gGCGA-CGGCcgGCGUACGGGuCCGg -3'
miRNA:   3'- gaCGCUaGUUGuaCGCGUGCUCcGGC- -5'
24971 3' -55.1 NC_005284.1 + 6788 0.72 0.357333
Target:  5'- aUGCGGcCGGCGuuugaUGCGUcgaucgGCGAGGCCGa -3'
miRNA:   3'- gACGCUaGUUGU-----ACGCG------UGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 6853 0.7 0.479715
Target:  5'- -cGCGAUCGAuCGUGUGCucgGAGGgCGg -3'
miRNA:   3'- gaCGCUAGUU-GUACGCGug-CUCCgGC- -5'
24971 3' -55.1 NC_005284.1 + 6998 0.67 0.641332
Target:  5'- -cGCGcUCGACAUgGCGCuCGccGGGCUGa -3'
miRNA:   3'- gaCGCuAGUUGUA-CGCGuGC--UCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 7689 0.68 0.608193
Target:  5'- -gGCGAcguaCAGCGUGCGCGUGAGcggugcGCCGa -3'
miRNA:   3'- gaCGCUa---GUUGUACGCGUGCUC------CGGC- -5'
24971 3' -55.1 NC_005284.1 + 9424 0.68 0.619231
Target:  5'- -cGUGAaacUCGGCGUGuCGCuCGcGGCCGg -3'
miRNA:   3'- gaCGCU---AGUUGUAC-GCGuGCuCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 9469 0.66 0.69625
Target:  5'- gUGUGAUCGGCGUgacgauaagGCGCAUucGGCUa -3'
miRNA:   3'- gACGCUAGUUGUA---------CGCGUGcuCCGGc -5'
24971 3' -55.1 NC_005284.1 + 11335 0.67 0.674393
Target:  5'- -aGCgGAUCGcGCAacUGCGCGuCGAGGCgGu -3'
miRNA:   3'- gaCG-CUAGU-UGU--ACGCGU-GCUCCGgC- -5'
24971 3' -55.1 NC_005284.1 + 12783 0.67 0.674393
Target:  5'- cCU-CGAUCGGCAUGCGgGCGcGGaGUCGu -3'
miRNA:   3'- -GAcGCUAGUUGUACGCgUGC-UC-CGGC- -5'
24971 3' -55.1 NC_005284.1 + 15824 0.79 0.128024
Target:  5'- -cGCgGAUCAGCAUcGCGCACGAaGGUCGa -3'
miRNA:   3'- gaCG-CUAGUUGUA-CGCGUGCU-CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 15937 0.66 0.70709
Target:  5'- -gGCGuUCcuGACGUcgGCGCGCGAcGCCGg -3'
miRNA:   3'- gaCGCuAG--UUGUA--CGCGUGCUcCGGC- -5'
24971 3' -55.1 NC_005284.1 + 16049 0.66 0.728537
Target:  5'- uUGCGccgguaaucGUCGGCAguaaGCGCGgGGGGCUc -3'
miRNA:   3'- gACGC---------UAGUUGUa---CGCGUgCUCCGGc -5'
24971 3' -55.1 NC_005284.1 + 16755 0.7 0.469556
Target:  5'- aCUGCGGUgcGCGUGCGCuuCGGuGuGCCGg -3'
miRNA:   3'- -GACGCUAguUGUACGCGu-GCU-C-CGGC- -5'
24971 3' -55.1 NC_005284.1 + 16851 0.7 0.500346
Target:  5'- uUGuCGGUCGACGgcgggucguaUGCGCAgGugcuGGCCGg -3'
miRNA:   3'- gAC-GCUAGUUGU----------ACGCGUgCu---CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 17963 0.71 0.439763
Target:  5'- gUGCGAUCGcCAa--GgGCGAGGCCGa -3'
miRNA:   3'- gACGCUAGUuGUacgCgUGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 18207 0.74 0.286364
Target:  5'- -gGCGAUCGACGacgGCGCACaGAuucagcaacGGCCGa -3'
miRNA:   3'- gaCGCUAGUUGUa--CGCGUG-CU---------CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.