Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24971 | 5' | -58 | NC_005284.1 | + | 16883 | 0.66 | 0.594462 |
Target: 5'- gCUGGC-CGGUGCGUucgacGGCAAgacgaCGUCGc -3' miRNA: 3'- aGGCUGcGCCACGCG-----CCGUUa----GCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 14042 | 0.66 | 0.562519 |
Target: 5'- aUCCGgaaGCGG-G-GCGGCAGgcuggCGUCAu -3' miRNA: 3'- -AGGCug-CGCCaCgCGCCGUUa----GCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 12041 | 0.66 | 0.562519 |
Target: 5'- gCCGaccucGCGCGGUuuucggcgcGUGCGGCGAU-GUCu -3' miRNA: 3'- aGGC-----UGCGCCA---------CGCGCCGUUAgCAGu -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 53881 | 0.66 | 0.573123 |
Target: 5'- -gCGGC-CGGgaUGgGCGGCcGUCGUCGc -3' miRNA: 3'- agGCUGcGCC--ACgCGCCGuUAGCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 23613 | 0.66 | 0.606254 |
Target: 5'- aCCGACuGcCGGauaacgucuggaucgGCGCGaCGAUCGUCAa -3' miRNA: 3'- aGGCUG-C-GCCa--------------CGCGCcGUUAGCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 17939 | 0.66 | 0.583773 |
Target: 5'- gCCGAgGCGGa-CGCGGCAaagcaagugcgAUCGcCAa -3' miRNA: 3'- aGGCUgCGCCacGCGCCGU-----------UAGCaGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 6395 | 0.66 | 0.562519 |
Target: 5'- uUUCGACGCucGGauagaUGUGCGuGCcGUCGUCGu -3' miRNA: 3'- -AGGCUGCG--CC-----ACGCGC-CGuUAGCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 12010 | 0.67 | 0.520707 |
Target: 5'- gCCGGCGCGagguuguuGUGCGUGGUcgcAAUCGcCc -3' miRNA: 3'- aGGCUGCGC--------CACGCGCCG---UUAGCaGu -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 22131 | 0.67 | 0.510438 |
Target: 5'- gCCGAUGCGGgagaggcggcaGCGUGGCGcuAUCGa-- -3' miRNA: 3'- aGGCUGCGCCa----------CGCGCCGU--UAGCagu -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 12788 | 0.67 | 0.541478 |
Target: 5'- aUCGGCauGCGG-GCGCGG-AGUCGUUc -3' miRNA: 3'- aGGCUG--CGCCaCGCGCCgUUAGCAGu -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 53781 | 0.67 | 0.541478 |
Target: 5'- gCUGAUGcCGGcUGCuGCGGCGAgcgcaucuugCGUCAu -3' miRNA: 3'- aGGCUGC-GCC-ACG-CGCCGUUa---------GCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 2063 | 0.67 | 0.490161 |
Target: 5'- -aUGACGUGGUGUGuCaGCAA-CGUCAu -3' miRNA: 3'- agGCUGCGCCACGC-GcCGUUaGCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 11583 | 0.68 | 0.460476 |
Target: 5'- aUCGACGCGGaGCucggcgacuacGCGGCcgagCGUCAg -3' miRNA: 3'- aGGCUGCGCCaCG-----------CGCCGuua-GCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 15106 | 0.68 | 0.460476 |
Target: 5'- aUCCG-CGCGaGUGCuGCGGgc-UCGUCGu -3' miRNA: 3'- -AGGCuGCGC-CACG-CGCCguuAGCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 11328 | 0.68 | 0.450794 |
Target: 5'- aUCCGGCaGCGGaucgcgcaacUGCGCgucgaGGCGGUCG-CAa -3' miRNA: 3'- -AGGCUG-CGCC----------ACGCG-----CCGUUAGCaGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 15895 | 0.68 | 0.450794 |
Target: 5'- --aGAgGCGGUGCGCGcGCuAUCGg-- -3' miRNA: 3'- aggCUgCGCCACGCGC-CGuUAGCagu -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 22748 | 0.69 | 0.386349 |
Target: 5'- gCCGAgcggcUGCGGUcgaucaagggGCGC-GCGAUCGUCAg -3' miRNA: 3'- aGGCU-----GCGCCA----------CGCGcCGUUAGCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 16027 | 0.69 | 0.409575 |
Target: 5'- gUCgGGCGCGacgagauccgcauUGCGcCGGUAAUCGUCGg -3' miRNA: 3'- -AGgCUGCGCc------------ACGC-GCCGUUAGCAGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 27678 | 0.7 | 0.360652 |
Target: 5'- gCCGGCGUGGcGCGCGG--GUCGcCGc -3' miRNA: 3'- aGGCUGCGCCaCGCGCCguUAGCaGU- -5' |
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24971 | 5' | -58 | NC_005284.1 | + | 16751 | 0.7 | 0.344194 |
Target: 5'- aCUGACuGCGGUGCGCGuGCGcuUCGg-- -3' miRNA: 3'- aGGCUG-CGCCACGCGC-CGUu-AGCagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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