miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24971 5' -58 NC_005284.1 + 54460 1.08 0.000638
Target:  5'- gUCCGACGCGGUGCGCGGCAAUCGUCAu -3'
miRNA:   3'- -AGGCUGCGCCACGCGCCGUUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 33128 0.85 0.033527
Target:  5'- gCCGACGCGGcggcaucgUGCGCGGCGAUCG-CAc -3'
miRNA:   3'- aGGCUGCGCC--------ACGCGCCGUUAGCaGU- -5'
24971 5' -58 NC_005284.1 + 46100 0.76 0.148452
Target:  5'- gCCGACgauuGCGGUGCGUGGCuccUCGUUu -3'
miRNA:   3'- aGGCUG----CGCCACGCGCCGuu-AGCAGu -5'
24971 5' -58 NC_005284.1 + 45281 0.72 0.26613
Target:  5'- cUCCG-CGCGGcUGCGCGGCAuggcugaguAgccgaaugcgccuuaUCGUCAc -3'
miRNA:   3'- -AGGCuGCGCC-ACGCGCCGU---------U---------------AGCAGU- -5'
24971 5' -58 NC_005284.1 + 43616 0.71 0.290916
Target:  5'- uUCCGcGCGCGGcgGcCGCGGCGcgagcugCGUCAg -3'
miRNA:   3'- -AGGC-UGCGCCa-C-GCGCCGUua-----GCAGU- -5'
24971 5' -58 NC_005284.1 + 13358 0.71 0.290916
Target:  5'- gUCGGCGgcaagcugaCGGUGgGCGGCGAUCuGUCu -3'
miRNA:   3'- aGGCUGC---------GCCACgCGCCGUUAG-CAGu -5'
24971 5' -58 NC_005284.1 + 14566 0.71 0.31217
Target:  5'- uUUCGGCGCuGUGCGUugcgcuuGGCGAucUCGUCGg -3'
miRNA:   3'- -AGGCUGCGcCACGCG-------CCGUU--AGCAGU- -5'
24971 5' -58 NC_005284.1 + 13993 0.71 0.320535
Target:  5'- -aUGGCGCGGcUGCGCGGUAAgcggggCGUg- -3'
miRNA:   3'- agGCUGCGCC-ACGCGCCGUUa-----GCAgu -5'
24971 5' -58 NC_005284.1 + 32803 0.71 0.328283
Target:  5'- gCCuGCGCGGguUGCGgGGCGG-CGUCGg -3'
miRNA:   3'- aGGcUGCGCC--ACGCgCCGUUaGCAGU- -5'
24971 5' -58 NC_005284.1 + 23351 0.7 0.33617
Target:  5'- cCCGGCGCGccGCaGCGGCGcaCGUCGc -3'
miRNA:   3'- aGGCUGCGCcaCG-CGCCGUuaGCAGU- -5'
24971 5' -58 NC_005284.1 + 16751 0.7 0.344194
Target:  5'- aCUGACuGCGGUGCGCGuGCGcuUCGg-- -3'
miRNA:   3'- aGGCUG-CGCCACGCGC-CGUu-AGCagu -5'
24971 5' -58 NC_005284.1 + 23496 0.7 0.352355
Target:  5'- aUCCGGCGUGGcGCGCGGaCcuguuccgccuGAUCGcCGa -3'
miRNA:   3'- -AGGCUGCGCCaCGCGCC-G-----------UUAGCaGU- -5'
24971 5' -58 NC_005284.1 + 27678 0.7 0.360652
Target:  5'- gCCGGCGUGGcGCGCGG--GUCGcCGc -3'
miRNA:   3'- aGGCUGCGCCaCGCGCCguUAGCaGU- -5'
24971 5' -58 NC_005284.1 + 37777 0.7 0.37765
Target:  5'- cUCGACGuuGaucGCGuCGGCGAUCGUCGc -3'
miRNA:   3'- aGGCUGCgcCa--CGC-GCCGUUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 22748 0.69 0.386349
Target:  5'- gCCGAgcggcUGCGGUcgaucaagggGCGC-GCGAUCGUCAg -3'
miRNA:   3'- aGGCU-----GCGCCA----------CGCGcCGUUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 16027 0.69 0.409575
Target:  5'- gUCgGGCGCGacgagauccgcauUGCGcCGGUAAUCGUCGg -3'
miRNA:   3'- -AGgCUGCGCc------------ACGC-GCCGUUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 11328 0.68 0.450794
Target:  5'- aUCCGGCaGCGGaucgcgcaacUGCGCgucgaGGCGGUCG-CAa -3'
miRNA:   3'- -AGGCUG-CGCC----------ACGCG-----CCGUUAGCaGU- -5'
24971 5' -58 NC_005284.1 + 15895 0.68 0.450794
Target:  5'- --aGAgGCGGUGCGCGcGCuAUCGg-- -3'
miRNA:   3'- aggCUgCGCCACGCGC-CGuUAGCagu -5'
24971 5' -58 NC_005284.1 + 11583 0.68 0.460476
Target:  5'- aUCGACGCGGaGCucggcgacuacGCGGCcgagCGUCAg -3'
miRNA:   3'- aGGCUGCGCCaCG-----------CGCCGuua-GCAGU- -5'
24971 5' -58 NC_005284.1 + 15106 0.68 0.460476
Target:  5'- aUCCG-CGCGaGUGCuGCGGgc-UCGUCGu -3'
miRNA:   3'- -AGGCuGCGC-CACG-CGCCguuAGCAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.