miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24972 3' -57.9 NC_005284.1 + 57 0.67 0.493583
Target:  5'- cCGGCGCAUC---CGCCGggcgggcaaCGACGGaCGGg -3'
miRNA:   3'- -GUCGCGUAGaacGCGGC---------GCUGUC-GCC- -5'
24972 3' -57.9 NC_005284.1 + 220 0.68 0.444165
Target:  5'- gAGCGCGU--UGUGCCGCuGCuuuGUGGa -3'
miRNA:   3'- gUCGCGUAgaACGCGGCGcUGu--CGCC- -5'
24972 3' -57.9 NC_005284.1 + 1697 0.68 0.463609
Target:  5'- gCGGCgGCAUUacuucugcgUUGCGCCGCGAUucUGGg -3'
miRNA:   3'- -GUCG-CGUAG---------AACGCGGCGCUGucGCC- -5'
24972 3' -57.9 NC_005284.1 + 4686 0.66 0.58801
Target:  5'- aAGCGgGgaUCaUUGCGCCGCcGCAaCGGa -3'
miRNA:   3'- gUCGCgU--AG-AACGCGGCGcUGUcGCC- -5'
24972 3' -57.9 NC_005284.1 + 6540 0.73 0.221295
Target:  5'- aGGCGC-UCagGCG-CGCGACAGUGGc -3'
miRNA:   3'- gUCGCGuAGaaCGCgGCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 7620 0.66 0.551709
Target:  5'- uCGGCGCcugauguacGCGCCGguCGuACAGCGGg -3'
miRNA:   3'- -GUCGCGuagaa----CGCGGC--GC-UGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 7687 0.68 0.444165
Target:  5'- uCGGCGaCGUacaGCGUgCGCGugAGCGGu -3'
miRNA:   3'- -GUCGC-GUAgaaCGCG-GCGCugUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 8356 0.69 0.379067
Target:  5'- -uGCGgAUCUgcaUGCGgcgaugaUCGCGGCGGCGGc -3'
miRNA:   3'- guCGCgUAGA---ACGC-------GGCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 8445 0.68 0.444165
Target:  5'- cCGGCGa-----GC-CCGCGACGGCGGa -3'
miRNA:   3'- -GUCGCguagaaCGcGGCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 8626 0.69 0.415881
Target:  5'- cCGGCucGUAUUUcaaUGCGgugCGCGACGGCGGg -3'
miRNA:   3'- -GUCG--CGUAGA---ACGCg--GCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 8899 0.7 0.346135
Target:  5'- aAGCGCGgcaagUUGCGCgGCaGCAGUGGc -3'
miRNA:   3'- gUCGCGUag---AACGCGgCGcUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 9585 0.74 0.184172
Target:  5'- aAGCGCAgggcgaUCgcGCuGCCGCGGCGGCGa -3'
miRNA:   3'- gUCGCGU------AGaaCG-CGGCGCUGUCGCc -5'
24972 3' -57.9 NC_005284.1 + 9912 0.75 0.161127
Target:  5'- aAGCGUcgCUcGCGCuCGCGcaGCAGCGGc -3'
miRNA:   3'- gUCGCGuaGAaCGCG-GCGC--UGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 10081 0.68 0.473498
Target:  5'- -cGCGCg----GCGaCCGCGACcgcGGCGGg -3'
miRNA:   3'- guCGCGuagaaCGC-GGCGCUG---UCGCC- -5'
24972 3' -57.9 NC_005284.1 + 10114 0.67 0.501727
Target:  5'- aCGGCGaccgaaaGCGCgGCGACGGCGc -3'
miRNA:   3'- -GUCGCguagaa-CGCGgCGCUGUCGCc -5'
24972 3' -57.9 NC_005284.1 + 10520 0.67 0.51405
Target:  5'- gUAGUGgAUCUggGUGCCGCcauCAGCGa -3'
miRNA:   3'- -GUCGCgUAGAa-CGCGGCGcu-GUCGCc -5'
24972 3' -57.9 NC_005284.1 + 10658 0.67 0.524413
Target:  5'- -uGCGCGaggaaCUggugcGCGCCGCGggcgcgaucgacACGGCGGg -3'
miRNA:   3'- guCGCGUa----GAa----CGCGGCGC------------UGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 11164 0.67 0.503772
Target:  5'- --aCGCAgCUcGCGCCGCGGCcgccgcgcGCGGa -3'
miRNA:   3'- gucGCGUaGAaCGCGGCGCUGu-------CGCC- -5'
24972 3' -57.9 NC_005284.1 + 11568 0.66 0.555948
Target:  5'- gAGCGCAg--UGCGCagauCGAC-GCGGa -3'
miRNA:   3'- gUCGCGUagaACGCGgc--GCUGuCGCC- -5'
24972 3' -57.9 NC_005284.1 + 11871 0.69 0.388728
Target:  5'- uGGCGCGUCg-GCGUgaagcggGCGAUGGCGGu -3'
miRNA:   3'- gUCGCGUAGaaCGCGg------CGCUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.