miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24972 3' -57.9 NC_005284.1 + 24851 0.68 0.434616
Target:  5'- gCAGUGCGUUUcGCGCaaccugCGCGAC-GUGGa -3'
miRNA:   3'- -GUCGCGUAGAaCGCG------GCGCUGuCGCC- -5'
24972 3' -57.9 NC_005284.1 + 22874 0.7 0.338028
Target:  5'- aAGgGCGUCgaGCGCCGCGAgcugaucauuuuCAGuUGGg -3'
miRNA:   3'- gUCgCGUAGaaCGCGGCGCU------------GUC-GCC- -5'
24972 3' -57.9 NC_005284.1 + 48758 0.7 0.35438
Target:  5'- -cGCGCGgcgUGCGCCGCGAguuGCGu -3'
miRNA:   3'- guCGCGUagaACGCGGCGCUgu-CGCc -5'
24972 3' -57.9 NC_005284.1 + 47375 0.69 0.371283
Target:  5'- aAGCGCGUCaUGC---GCGACAGCGa -3'
miRNA:   3'- gUCGCGUAGaACGcggCGCUGUCGCc -5'
24972 3' -57.9 NC_005284.1 + 8356 0.69 0.379067
Target:  5'- -uGCGgAUCUgcaUGCGgcgaugaUCGCGGCGGCGGc -3'
miRNA:   3'- guCGCgUAGA---ACGC-------GGCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 11871 0.69 0.388728
Target:  5'- uGGCGCGUCg-GCGUgaagcggGCGAUGGCGGu -3'
miRNA:   3'- gUCGCGUAGaaCGCGg------CGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 42015 0.69 0.397649
Target:  5'- aCAGCGUAUCUUcgcgaGCGCgUGCcGGCcgAGCGGc -3'
miRNA:   3'- -GUCGCGUAGAA-----CGCG-GCG-CUG--UCGCC- -5'
24972 3' -57.9 NC_005284.1 + 21234 0.69 0.404881
Target:  5'- gGGCGCAcauaucaGCuCGCGGCGGCGGu -3'
miRNA:   3'- gUCGCGUagaacg-CG-GCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 8626 0.69 0.415881
Target:  5'- cCGGCucGUAUUUcaaUGCGgugCGCGACGGCGGg -3'
miRNA:   3'- -GUCG--CGUAGA---ACGCg--GCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 21004 0.7 0.338028
Target:  5'- gAGUgGUAg---GgGCCGCGACAGCGGc -3'
miRNA:   3'- gUCG-CGUagaaCgCGGCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 21831 0.7 0.33006
Target:  5'- cCGGCGCuUCcaGCGCCGCcGGC-GUGGg -3'
miRNA:   3'- -GUCGCGuAGaaCGCGGCG-CUGuCGCC- -5'
24972 3' -57.9 NC_005284.1 + 21543 0.7 0.327696
Target:  5'- uCGGCGCAcaucggCUUGCcgacgagcagGCCGCGcgggcguucgacgcGCAGCGGc -3'
miRNA:   3'- -GUCGCGUa-----GAACG----------CGGCGC--------------UGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 16416 0.76 0.136552
Target:  5'- aAGCGCAUCUacgGCGCCaagggagguggugGUGGCGGUGGc -3'
miRNA:   3'- gUCGCGUAGAa--CGCGG-------------CGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 9912 0.75 0.161127
Target:  5'- aAGCGUcgCUcGCGCuCGCGcaGCAGCGGc -3'
miRNA:   3'- gUCGCGuaGAaCGCG-GCGC--UGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 9585 0.74 0.184172
Target:  5'- aAGCGCAgggcgaUCgcGCuGCCGCGGCGGCGa -3'
miRNA:   3'- gUCGCGU------AGaaCG-CGGCGCUGUCGCc -5'
24972 3' -57.9 NC_005284.1 + 16178 0.73 0.215625
Target:  5'- uCGGCGCGUCgaugGCGCUG-GGCGGCa- -3'
miRNA:   3'- -GUCGCGUAGaa--CGCGGCgCUGUCGcc -5'
24972 3' -57.9 NC_005284.1 + 6540 0.73 0.221295
Target:  5'- aGGCGC-UCagGCG-CGCGACAGUGGc -3'
miRNA:   3'- gUCGCGuAGaaCGCgGCGCUGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 53802 0.73 0.233016
Target:  5'- gAGCGCAUCUUGCGUCauGCG-CAGauGa -3'
miRNA:   3'- gUCGCGUAGAACGCGG--CGCuGUCgcC- -5'
24972 3' -57.9 NC_005284.1 + 21661 0.72 0.264606
Target:  5'- -cGCGCAcgaUGcCGCCGCGuCGGCGGu -3'
miRNA:   3'- guCGCGUagaAC-GCGGCGCuGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 17897 0.71 0.314542
Target:  5'- gGGCGCAUCc-GCGCaGCGGCuGGCGa -3'
miRNA:   3'- gUCGCGUAGaaCGCGgCGCUG-UCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.