miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25027 3' -48.6 NC_005336.1 + 139097 0.75 0.814575
Target:  5'- ------aAAAACUUUUCGGAGGAGCGc -3'
miRNA:   3'- aacacgcUUUUGAAAAGCCUCCUCGC- -5'
25027 3' -48.6 NC_005336.1 + 139097 0.75 0.814575
Target:  5'- ------aAAAACUUUUCGGAGGAGCGc -3'
miRNA:   3'- aacacgcUUUUGAAAAGCCUCCUCGC- -5'
25027 3' -48.6 NC_005336.1 + 138874 1.06 0.018076
Target:  5'- cUUGUGCGAAAACUUUUCGGAGGAGCGc -3'
miRNA:   3'- -AACACGCUUUUGAAAAGCCUCCUCGC- -5'
25027 3' -48.6 NC_005336.1 + 138874 1.06 0.018076
Target:  5'- cUUGUGCGAAAACUUUUCGGAGGAGCGc -3'
miRNA:   3'- -AACACGCUUUUGAAAAGCCUCCUCGC- -5'
25027 3' -48.6 NC_005336.1 + 138419 0.69 0.985611
Target:  5'- --uUGUGAAAACUcUUCGGAGGucAGuCGa -3'
miRNA:   3'- aacACGCUUUUGAaAAGCCUCC--UC-GC- -5'
25027 3' -48.6 NC_005336.1 + 138419 0.69 0.985611
Target:  5'- --uUGUGAAAACUcUUCGGAGGucAGuCGa -3'
miRNA:   3'- aacACGCUUUUGAaAAGCCUCC--UC-GC- -5'
25027 3' -48.6 NC_005336.1 + 132724 0.67 0.995894
Target:  5'- gUGUGCGGAGACgugcgcgugcugcUGGAGGcuGGCGc -3'
miRNA:   3'- aACACGCUUUUGaaaa---------GCCUCC--UCGC- -5'
25027 3' -48.6 NC_005336.1 + 130411 0.7 0.9712
Target:  5'- -cGUaGCGGAGuGCUUagCGGAGGuAGCGg -3'
miRNA:   3'- aaCA-CGCUUU-UGAAaaGCCUCC-UCGC- -5'
25027 3' -48.6 NC_005336.1 + 121822 0.7 0.968042
Target:  5'- ---gGCGAAGaggagcACUgcUCGGAGGAGUGc -3'
miRNA:   3'- aacaCGCUUU------UGAaaAGCCUCCUCGC- -5'
25027 3' -48.6 NC_005336.1 + 117458 0.66 0.997672
Target:  5'- cUGUGCGGAAGCgugcacUCGGcgcaauggaucGGcGAGCGc -3'
miRNA:   3'- aACACGCUUUUGaaa---AGCC-----------UC-CUCGC- -5'
25027 3' -48.6 NC_005336.1 + 110790 0.68 0.988908
Target:  5'- aUGUGCGAGAACUgcgCGaGcAGGAuGCc -3'
miRNA:   3'- aACACGCUUUUGAaaaGC-C-UCCU-CGc -5'
25027 3' -48.6 NC_005336.1 + 110616 0.66 0.997219
Target:  5'- ---cGCGAcGACgagcUCGGAGGGcGCGa -3'
miRNA:   3'- aacaCGCUuUUGaaa-AGCCUCCU-CGC- -5'
25027 3' -48.6 NC_005336.1 + 103389 0.7 0.968042
Target:  5'- -gGUcGCGAGcGCcUUUCGcGAGGAGUGg -3'
miRNA:   3'- aaCA-CGCUUuUGaAAAGC-CUCCUCGC- -5'
25027 3' -48.6 NC_005336.1 + 99934 0.66 0.998395
Target:  5'- cUGaUGCGGcgGCUgcgugCGGAGG-GCGc -3'
miRNA:   3'- aAC-ACGCUuuUGAaaa--GCCUCCuCGC- -5'
25027 3' -48.6 NC_005336.1 + 93883 0.66 0.997219
Target:  5'- -aGUGCGcuuucuGGACgaagaGGAGGAGCu -3'
miRNA:   3'- aaCACGCu-----UUUGaaaagCCUCCUCGc -5'
25027 3' -48.6 NC_005336.1 + 93148 0.68 0.988908
Target:  5'- -cGUGCugguGAAGCUUggcuucUCGGAGGuGCGc -3'
miRNA:   3'- aaCACGc---UUUUGAAa-----AGCCUCCuCGC- -5'
25027 3' -48.6 NC_005336.1 + 86535 0.67 0.993723
Target:  5'- cUUGUGCGGAAACaugcUCGcGAGGcGCc -3'
miRNA:   3'- -AACACGCUUUUGaaa-AGC-CUCCuCGc -5'
25027 3' -48.6 NC_005336.1 + 77758 0.67 0.995402
Target:  5'- ----cCGAAcAACUUUgCGGAGGAGCa -3'
miRNA:   3'- aacacGCUU-UUGAAAaGCCUCCUCGc -5'
25027 3' -48.6 NC_005336.1 + 46181 0.67 0.996092
Target:  5'- gUGUGCGAAGACUUgcUCGGcaucgacAGCGu -3'
miRNA:   3'- aACACGCUUUUGAAa-AGCCucc----UCGC- -5'
25027 3' -48.6 NC_005336.1 + 36765 0.71 0.948544
Target:  5'- -cGUGCGGAAGCUgccgUCGGAcuuGCGg -3'
miRNA:   3'- aaCACGCUUUUGAaa--AGCCUccuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.