miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25027 5' -56 NC_005336.1 + 100487 0.67 0.843662
Target:  5'- -gCGCCgcucggugcgcaccuUCCUCGC--GCUCGCGGAGa -3'
miRNA:   3'- caGCGG---------------AGGGGCGuuUGAGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 122758 0.67 0.840376
Target:  5'- cUCGCCggCCUGCGGcugUUCGCGGGAUg -3'
miRNA:   3'- cAGCGGagGGGCGUUu--GAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 138771 0.67 0.840376
Target:  5'- -cCGCCg-CCCGCGAccGCggggaGCGGAGCg -3'
miRNA:   3'- caGCGGagGGGCGUU--UGag---CGUCUUG- -5'
25027 5' -56 NC_005336.1 + 138771 0.67 0.840376
Target:  5'- -cCGCCg-CCCGCGAccGCggggaGCGGAGCg -3'
miRNA:   3'- caGCGGagGGGCGUU--UGag---CGUCUUG- -5'
25027 5' -56 NC_005336.1 + 96373 0.67 0.840376
Target:  5'- cGUCuGCCUCCgCaGCGgcgaugAACUCGCGGuGGCg -3'
miRNA:   3'- -CAG-CGGAGGgG-CGU------UUGAGCGUC-UUG- -5'
25027 5' -56 NC_005336.1 + 47295 0.67 0.840376
Target:  5'- uGUCGuCCUCCUCGCu--CUCGCu---- -3'
miRNA:   3'- -CAGC-GGAGGGGCGuuuGAGCGucuug -5'
25027 5' -56 NC_005336.1 + 104206 0.67 0.832026
Target:  5'- -aCGCCUUCCUcgaGCAgggcGACgccaucgCGCGGAACg -3'
miRNA:   3'- caGCGGAGGGG---CGU----UUGa------GCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 21549 0.67 0.832026
Target:  5'- aUCGCCgcuaaCCCGCuc-UUCGCGGAcgGCg -3'
miRNA:   3'- cAGCGGag---GGGCGuuuGAGCGUCU--UG- -5'
25027 5' -56 NC_005336.1 + 58536 0.67 0.832026
Target:  5'- -aCGCCguuaUCCCCGCGGGCgUCGaguacuuGGACa -3'
miRNA:   3'- caGCGG----AGGGGCGUUUG-AGCgu-----CUUG- -5'
25027 5' -56 NC_005336.1 + 35741 0.67 0.832026
Target:  5'- -cCGCCgcgCUCCGCGAACUgcCGCuucAGGAUg -3'
miRNA:   3'- caGCGGa--GGGGCGUUUGA--GCG---UCUUG- -5'
25027 5' -56 NC_005336.1 + 86953 0.67 0.82349
Target:  5'- gGUCGaCCUCUUCGUcguACaCGCAGGACu -3'
miRNA:   3'- -CAGC-GGAGGGGCGuu-UGaGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 10427 0.67 0.82349
Target:  5'- -cCGUCUCCgCGCGcuGC-CGCAGGAUg -3'
miRNA:   3'- caGCGGAGGgGCGUu-UGaGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 98312 0.67 0.82349
Target:  5'- -aCGCCg-UCCGCGAGCUCGCGu--- -3'
miRNA:   3'- caGCGGagGGGCGUUUGAGCGUcuug -5'
25027 5' -56 NC_005336.1 + 69379 0.67 0.82349
Target:  5'- -cCGUCUUCCUGCcggcGCUCGgAGGACc -3'
miRNA:   3'- caGCGGAGGGGCGuu--UGAGCgUCUUG- -5'
25027 5' -56 NC_005336.1 + 64061 0.67 0.82349
Target:  5'- -cCGCaugacCUCCGCGGacgucucgcuGCUCGCGGAGCu -3'
miRNA:   3'- caGCGga---GGGGCGUU----------UGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 88725 0.67 0.82349
Target:  5'- uUgGCCUgCUCCGCGGugcGCUCGCGGuAUa -3'
miRNA:   3'- cAgCGGA-GGGGCGUU---UGAGCGUCuUG- -5'
25027 5' -56 NC_005336.1 + 109231 0.67 0.814775
Target:  5'- -gCGCCgcguUCgCCGCGuugAACUCGCGGAu- -3'
miRNA:   3'- caGCGG----AGgGGCGU---UUGAGCGUCUug -5'
25027 5' -56 NC_005336.1 + 35527 0.68 0.80589
Target:  5'- --gGCCUUCCCGCGgAACUC-UGGGACc -3'
miRNA:   3'- cagCGGAGGGGCGU-UUGAGcGUCUUG- -5'
25027 5' -56 NC_005336.1 + 133154 0.68 0.80589
Target:  5'- -gCGUCUCCgCCGC--GCUCGUGGAc- -3'
miRNA:   3'- caGCGGAGG-GGCGuuUGAGCGUCUug -5'
25027 5' -56 NC_005336.1 + 47759 0.68 0.796843
Target:  5'- cUCGCaccucaUCCCCGUGcugcugggccccAACuUCGCGGAGCu -3'
miRNA:   3'- cAGCGg-----AGGGGCGU------------UUG-AGCGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.