miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25027 5' -56 NC_005336.1 + 26985 0.66 0.871763
Target:  5'- -cCGCCUCCUCGagguccGCgUCGgAGAGCa -3'
miRNA:   3'- caGCGGAGGGGCguu---UG-AGCgUCUUG- -5'
25027 5' -56 NC_005336.1 + 29589 0.68 0.759222
Target:  5'- uUCGCCUUccaCCUGCAGuggcccgcGCUCacGCAGGGCg -3'
miRNA:   3'- cAGCGGAG---GGGCGUU--------UGAG--CGUCUUG- -5'
25027 5' -56 NC_005336.1 + 29776 0.66 0.88616
Target:  5'- cUCGCgCaccgCCUgCGCGAACUCGCGGcuGGCa -3'
miRNA:   3'- cAGCG-Ga---GGG-GCGUUUGAGCGUC--UUG- -5'
25027 5' -56 NC_005336.1 + 29779 0.66 0.88616
Target:  5'- -gCGCaccgCCUgCGCGAACUCGCGGcuGGCa -3'
miRNA:   3'- caGCGga--GGG-GCGUUUGAGCGUC--UUG- -5'
25027 5' -56 NC_005336.1 + 30747 0.68 0.759222
Target:  5'- -gCGUCUCaCCCGCGcGCuUCGC-GAGCg -3'
miRNA:   3'- caGCGGAG-GGGCGUuUG-AGCGuCUUG- -5'
25027 5' -56 NC_005336.1 + 32506 0.66 0.893015
Target:  5'- -gCGCCUCgacaUCGUGAAgUCGCGGAGg -3'
miRNA:   3'- caGCGGAGg---GGCGUUUgAGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 34756 0.66 0.856486
Target:  5'- -gCGCCgcgaugUCgCCGCAGuuCUCGCAGAcgaGCa -3'
miRNA:   3'- caGCGG------AGgGGCGUUu-GAGCGUCU---UG- -5'
25027 5' -56 NC_005336.1 + 35527 0.68 0.80589
Target:  5'- --gGCCUUCCCGCGgAACUC-UGGGACc -3'
miRNA:   3'- cagCGGAGGGGCGU-UUGAGcGUCUUG- -5'
25027 5' -56 NC_005336.1 + 35741 0.67 0.832026
Target:  5'- -cCGCCgcgCUCCGCGAACUgcCGCuucAGGAUg -3'
miRNA:   3'- caGCGGa--GGGGCGUUUGA--GCG---UCUUG- -5'
25027 5' -56 NC_005336.1 + 36402 0.66 0.893015
Target:  5'- --gGCCUCCCacuccuCGCGAaaggcGCUCGCGaccgcGAGCg -3'
miRNA:   3'- cagCGGAGGG------GCGUU-----UGAGCGU-----CUUG- -5'
25027 5' -56 NC_005336.1 + 38077 0.7 0.658432
Target:  5'- gGUgGCCacgUCCgcggCCGCGAGCcgCGCGGAGCg -3'
miRNA:   3'- -CAgCGG---AGG----GGCGUUUGa-GCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 38568 0.68 0.778301
Target:  5'- -aCGCCg-UUCGCGAGUUCGCGGAGCg -3'
miRNA:   3'- caGCGGagGGGCGUUUGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 39896 0.72 0.579837
Target:  5'- gGUCGCgCUCCaCCGCucggcgcaguccuccAGGCUCGCgcAGGGCg -3'
miRNA:   3'- -CAGCG-GAGG-GGCG---------------UUUGAGCG--UCUUG- -5'
25027 5' -56 NC_005336.1 + 40054 0.68 0.776416
Target:  5'- -gCGCCUCCUCGCGcgagcaauccgccgcGCcggcggccgccucgUCGCAGAGCa -3'
miRNA:   3'- caGCGGAGGGGCGUu--------------UG--------------AGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 41130 0.68 0.778301
Target:  5'- cUUGCCgCCCuCGCAGGCgacggcgCGCGGGAa -3'
miRNA:   3'- cAGCGGaGGG-GCGUUUGa------GCGUCUUg -5'
25027 5' -56 NC_005336.1 + 41473 0.69 0.749505
Target:  5'- -cCGCCgucgaagaaCCaggaCGCGAGCUCGCGGAcgGCg -3'
miRNA:   3'- caGCGGa--------GGg---GCGUUUGAGCGUCU--UG- -5'
25027 5' -56 NC_005336.1 + 41910 0.68 0.778301
Target:  5'- -cCGUCUCgCgCCGaggcGCUCGCGGAGCg -3'
miRNA:   3'- caGCGGAG-G-GGCguu-UGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 45606 0.66 0.893015
Target:  5'- cGUCGuCCggcgacaaCCCCGCAccggcgccGAC-CGCGGAAUc -3'
miRNA:   3'- -CAGC-GGa-------GGGGCGU--------UUGaGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 47057 0.66 0.895691
Target:  5'- -gCGCCgUCCCCGUggaucgggauagccgAGACgCGCGcGAACg -3'
miRNA:   3'- caGCGG-AGGGGCG---------------UUUGaGCGU-CUUG- -5'
25027 5' -56 NC_005336.1 + 47295 0.67 0.840376
Target:  5'- uGUCGuCCUCCUCGCu--CUCGCu---- -3'
miRNA:   3'- -CAGC-GGAGGGGCGuuuGAGCGucuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.