miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25027 5' -56 NC_005336.1 + 1022 0.66 0.856486
Target:  5'- -cCGCUccgcUCCCCGCGG--UCGCGGGcgGCg -3'
miRNA:   3'- caGCGG----AGGGGCGUUugAGCGUCU--UG- -5'
25027 5' -56 NC_005336.1 + 1022 0.66 0.856486
Target:  5'- -cCGCUccgcUCCCCGCGG--UCGCGGGcgGCg -3'
miRNA:   3'- caGCGG----AGGGGCGUUugAGCGUCU--UG- -5'
25027 5' -56 NC_005336.1 + 5400 0.7 0.648083
Target:  5'- -cCGCC-CUCCGCGAugccgugccgGCUCGCGGGcACg -3'
miRNA:   3'- caGCGGaGGGGCGUU----------UGAGCGUCU-UG- -5'
25027 5' -56 NC_005336.1 + 5683 0.66 0.871763
Target:  5'- -cCGCCagcgUCUCUGCGAGCgcCGCGGAGg -3'
miRNA:   3'- caGCGG----AGGGGCGUUUGa-GCGUCUUg -5'
25027 5' -56 NC_005336.1 + 6457 0.66 0.8557
Target:  5'- -cCGCCUCCggcgagaucgaguCCGCGGACcCGCgcgccagagGGAACa -3'
miRNA:   3'- caGCGGAGG-------------GGCGUUUGaGCG---------UCUUG- -5'
25027 5' -56 NC_005336.1 + 7822 0.68 0.768824
Target:  5'- gGUCGUCgUCCgCGCAacGACUggcgGCAGAGCg -3'
miRNA:   3'- -CAGCGG-AGGgGCGU--UUGAg---CGUCUUG- -5'
25027 5' -56 NC_005336.1 + 9322 0.7 0.699523
Target:  5'- cUUGaCCUCCgCGCugcgcguGAcCUCGCAGAGCg -3'
miRNA:   3'- cAGC-GGAGGgGCGu------UU-GAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 9758 0.69 0.709673
Target:  5'- -aCGCCgCCCCa-GAACUCGCAGuACu -3'
miRNA:   3'- caGCGGaGGGGcgUUUGAGCGUCuUG- -5'
25027 5' -56 NC_005336.1 + 10427 0.67 0.82349
Target:  5'- -cCGUCUCCgCGCGcuGC-CGCAGGAUg -3'
miRNA:   3'- caGCGGAGGgGCGUu-UGaGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 10651 0.66 0.893015
Target:  5'- aUCGUCUUCCCGUcc-CUCGCcuucgcGAGCg -3'
miRNA:   3'- cAGCGGAGGGGCGuuuGAGCGu-----CUUG- -5'
25027 5' -56 NC_005336.1 + 11750 0.69 0.739682
Target:  5'- -aCGcCCUCCuuGgCGAGCgUGCAGAGCu -3'
miRNA:   3'- caGC-GGAGGggC-GUUUGaGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 12798 0.69 0.729762
Target:  5'- gGUCGCCgCgCCCGCGGGCgUGaCGGAAUa -3'
miRNA:   3'- -CAGCGGaG-GGGCGUUUGaGC-GUCUUG- -5'
25027 5' -56 NC_005336.1 + 14362 0.66 0.856486
Target:  5'- -cCGCgagcagCCCCGCGGcgcGgUCGCGGGGCa -3'
miRNA:   3'- caGCGga----GGGGCGUU---UgAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 16700 0.66 0.856486
Target:  5'- -gCGCCUCCCCGa--GCUC-CucGAGCg -3'
miRNA:   3'- caGCGGAGGGGCguuUGAGcGu-CUUG- -5'
25027 5' -56 NC_005336.1 + 16754 0.66 0.88616
Target:  5'- -gCGCCUUgucgaaguugCUCGCGAGgUCGCGGAcGCg -3'
miRNA:   3'- caGCGGAG----------GGGCGUUUgAGCGUCU-UG- -5'
25027 5' -56 NC_005336.1 + 18594 0.66 0.893015
Target:  5'- -aCGUaCUCCuCCGCGAGCUC-CGGAc- -3'
miRNA:   3'- caGCG-GAGG-GGCGUUUGAGcGUCUug -5'
25027 5' -56 NC_005336.1 + 20034 0.69 0.739682
Target:  5'- cUUGCCgCCagaaCGCGu-CUCGCAGAACu -3'
miRNA:   3'- cAGCGGaGGg---GCGUuuGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 20416 0.66 0.856486
Target:  5'- cUCGCCcacgCCCaCGCGGAuCUCGCgcuGGAAg -3'
miRNA:   3'- cAGCGGa---GGG-GCGUUU-GAGCG---UCUUg -5'
25027 5' -56 NC_005336.1 + 21549 0.67 0.832026
Target:  5'- aUCGCCgcuaaCCCGCuc-UUCGCGGAcgGCg -3'
miRNA:   3'- cAGCGGag---GGGCGuuuGAGCGUCU--UG- -5'
25027 5' -56 NC_005336.1 + 24415 0.69 0.709673
Target:  5'- -gCGCCgaccgugacCUCCGCGAAUaUCGCGGAGCc -3'
miRNA:   3'- caGCGGa--------GGGGCGUUUG-AGCGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.