miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25027 5' -56 NC_005336.1 + 138910 1.09 0.002438
Target:  5'- gGUCGCCUCCCCGCAAACUCGCAGAACu -3'
miRNA:   3'- -CAGCGGAGGGGCGUUUGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 138910 1.09 0.002438
Target:  5'- gGUCGCCUCCCCGCAAACUCGCAGAACu -3'
miRNA:   3'- -CAGCGGAGGGGCGUUUGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 100324 0.81 0.165968
Target:  5'- -cCGCCuUCCCCGCGAacgugguGCUCGUGGAGCg -3'
miRNA:   3'- caGCGG-AGGGGCGUU-------UGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 65358 0.77 0.300871
Target:  5'- -gCGCgUCUCUGCGAGCUCGgAGGACa -3'
miRNA:   3'- caGCGgAGGGGCGUUUGAGCgUCUUG- -5'
25027 5' -56 NC_005336.1 + 77992 0.76 0.337727
Target:  5'- aGUCGCCgCCCUGCGAgcaccagauccgGCUCGCGGucGCg -3'
miRNA:   3'- -CAGCGGaGGGGCGUU------------UGAGCGUCu-UG- -5'
25027 5' -56 NC_005336.1 + 55509 0.76 0.353362
Target:  5'- -cCGCCcgggaUCGCGAACUCGCAGAACg -3'
miRNA:   3'- caGCGGagg--GGCGUUUGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 125423 0.75 0.398077
Target:  5'- -cCGCCacugCCCCGCGAccgcgccgcggggcuGCUCGCGGAGa -3'
miRNA:   3'- caGCGGa---GGGGCGUU---------------UGAGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 132252 0.74 0.429833
Target:  5'- cUCGCUgCCCgGCGAACUgGUGGAGCg -3'
miRNA:   3'- cAGCGGaGGGgCGUUUGAgCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 83383 0.73 0.495577
Target:  5'- -gCGCCUCUggguCCGCGGAgUCGgGGAACg -3'
miRNA:   3'- caGCGGAGG----GGCGUUUgAGCgUCUUG- -5'
25027 5' -56 NC_005336.1 + 54235 0.73 0.495577
Target:  5'- -gCGCgUCUCCGCGGAgagCGCGGAGCa -3'
miRNA:   3'- caGCGgAGGGGCGUUUga-GCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 116215 0.72 0.535129
Target:  5'- cUCGCaCUCCCCGCAccccgcaccAACacacccCGCGGAACc -3'
miRNA:   3'- cAGCG-GAGGGGCGU---------UUGa-----GCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 97879 0.72 0.565504
Target:  5'- -aCGCCgcgCUCCGCGAGCgccucggCGCGGAGa -3'
miRNA:   3'- caGCGGa--GGGGCGUUUGa------GCGUCUUg -5'
25027 5' -56 NC_005336.1 + 39896 0.72 0.579837
Target:  5'- gGUCGCgCUCCaCCGCucggcgcaguccuccAGGCUCGCgcAGGGCg -3'
miRNA:   3'- -CAGCG-GAGG-GGCG---------------UUUGAGCG--UCUUG- -5'
25027 5' -56 NC_005336.1 + 99729 0.71 0.60664
Target:  5'- uUCGCCUUCUCGCug--UCGCAGGAg -3'
miRNA:   3'- cAGCGGAGGGGCGuuugAGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 114488 0.71 0.60664
Target:  5'- -gCGCCUCCgacaUCGCGuuCUCGCGGcGCg -3'
miRNA:   3'- caGCGGAGG----GGCGUuuGAGCGUCuUG- -5'
25027 5' -56 NC_005336.1 + 85567 0.71 0.627354
Target:  5'- -cCGCgCUCUCCGCGgaGACgCGCAGAAg -3'
miRNA:   3'- caGCG-GAGGGGCGU--UUGaGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 51082 0.71 0.627354
Target:  5'- --aGCCgcgCCCCGCGAGCgUCGCgaugAGGAUg -3'
miRNA:   3'- cagCGGa--GGGGCGUUUG-AGCG----UCUUG- -5'
25027 5' -56 NC_005336.1 + 120533 0.71 0.637721
Target:  5'- -cUGUUUCCUcaagCGCAuGCUCGCGGAACa -3'
miRNA:   3'- caGCGGAGGG----GCGUuUGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 106310 0.71 0.637721
Target:  5'- -gCGCUUCaugcgcagCCCGCAGAuCUCGCAGGGg -3'
miRNA:   3'- caGCGGAG--------GGGCGUUU-GAGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 134210 0.71 0.637721
Target:  5'- -aCGCCggaCCCCGCcugugcgggcgaGAGCgcgcucgCGCAGAACa -3'
miRNA:   3'- caGCGGa--GGGGCG------------UUUGa------GCGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.