miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25027 5' -56 NC_005336.1 + 139525 0.68 0.759222
Target:  5'- gGUCgGCCUCCCuCGaagucuaaAAACuuuUCGCGGGACu -3'
miRNA:   3'- -CAG-CGGAGGG-GCg-------UUUG---AGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 9758 0.69 0.709673
Target:  5'- -aCGCCgCCCCa-GAACUCGCAGuACu -3'
miRNA:   3'- caGCGGaGGGGcgUUUGAGCGUCuUG- -5'
25027 5' -56 NC_005336.1 + 65785 0.69 0.709673
Target:  5'- --gGCgUCUCCGCGAGCgugCGCGuGGACg -3'
miRNA:   3'- cagCGgAGGGGCGUUUGa--GCGU-CUUG- -5'
25027 5' -56 NC_005336.1 + 139136 0.69 0.709673
Target:  5'- -cCGCCUCUCCgacacuucGCAAAacuuuUUCGCGGAGCc -3'
miRNA:   3'- caGCGGAGGGG--------CGUUU-----GAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 12798 0.69 0.729762
Target:  5'- gGUCGCCgCgCCCGCGGGCgUGaCGGAAUa -3'
miRNA:   3'- -CAGCGGaG-GGGCGUUUGaGC-GUCUUG- -5'
25027 5' -56 NC_005336.1 + 88703 0.69 0.739682
Target:  5'- -gCGCCguacaUCCUcauCGCGAcGCUCGCGGGGCg -3'
miRNA:   3'- caGCGG-----AGGG---GCGUU-UGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 11750 0.69 0.739682
Target:  5'- -aCGcCCUCCuuGgCGAGCgUGCAGAGCu -3'
miRNA:   3'- caGC-GGAGGggC-GUUUGaGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 20034 0.69 0.739682
Target:  5'- cUUGCCgCCagaaCGCGu-CUCGCAGAACu -3'
miRNA:   3'- cAGCGGaGGg---GCGUuuGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 41473 0.69 0.749505
Target:  5'- -cCGCCgucgaagaaCCaggaCGCGAGCUCGCGGAcgGCg -3'
miRNA:   3'- caGCGGa--------GGg---GCGUUUGAGCGUCU--UG- -5'
25027 5' -56 NC_005336.1 + 9322 0.7 0.699523
Target:  5'- cUUGaCCUCCgCGCugcgcguGAcCUCGCAGAGCg -3'
miRNA:   3'- cAGC-GGAGGgGCGu------UU-GAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 63386 0.7 0.679056
Target:  5'- -cCGCCaUCCUCGCAGACUUcaAGGACc -3'
miRNA:   3'- caGCGG-AGGGGCGUUUGAGcgUCUUG- -5'
25027 5' -56 NC_005336.1 + 134105 0.7 0.658432
Target:  5'- -gCGCUggcCUCCGCGGcGCUCGCAGAGa -3'
miRNA:   3'- caGCGGa--GGGGCGUU-UGAGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 100324 0.81 0.165968
Target:  5'- -cCGCCuUCCCCGCGAacgugguGCUCGUGGAGCg -3'
miRNA:   3'- caGCGG-AGGGGCGUU-------UGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 55509 0.76 0.353362
Target:  5'- -cCGCCcgggaUCGCGAACUCGCAGAACg -3'
miRNA:   3'- caGCGGagg--GGCGUUUGAGCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 125423 0.75 0.398077
Target:  5'- -cCGCCacugCCCCGCGAccgcgccgcggggcuGCUCGCGGAGa -3'
miRNA:   3'- caGCGGa---GGGGCGUU---------------UGAGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 132252 0.74 0.429833
Target:  5'- cUCGCUgCCCgGCGAACUgGUGGAGCg -3'
miRNA:   3'- cAGCGGaGGGgCGUUUGAgCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 116215 0.72 0.535129
Target:  5'- cUCGCaCUCCCCGCAccccgcaccAACacacccCGCGGAACc -3'
miRNA:   3'- cAGCG-GAGGGGCGU---------UUGa-----GCGUCUUG- -5'
25027 5' -56 NC_005336.1 + 97879 0.72 0.565504
Target:  5'- -aCGCCgcgCUCCGCGAGCgccucggCGCGGAGa -3'
miRNA:   3'- caGCGGa--GGGGCGUUUGa------GCGUCUUg -5'
25027 5' -56 NC_005336.1 + 85567 0.71 0.627354
Target:  5'- -cCGCgCUCUCCGCGgaGACgCGCAGAAg -3'
miRNA:   3'- caGCG-GAGGGGCGU--UUGaGCGUCUUg -5'
25027 5' -56 NC_005336.1 + 134210 0.71 0.637721
Target:  5'- -aCGCCggaCCCCGCcugugcgggcgaGAGCgcgcucgCGCAGAACa -3'
miRNA:   3'- caGCGGa--GGGGCG------------UUUGa------GCGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.