Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25027 | 5' | -56 | NC_005336.1 | + | 73280 | 0.66 | 0.864232 |
Target: 5'- -gCGCCcgCaCCCGC-AGCUCGUGGAc- -3' miRNA: 3'- caGCGGa-G-GGGCGuUUGAGCGUCUug -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 16754 | 0.66 | 0.88616 |
Target: 5'- -gCGCCUUgucgaaguugCUCGCGAGgUCGCGGAcGCg -3' miRNA: 3'- caGCGGAG----------GGGCGUUUgAGCGUCU-UG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 18594 | 0.66 | 0.893015 |
Target: 5'- -aCGUaCUCCuCCGCGAGCUC-CGGAc- -3' miRNA: 3'- caGCG-GAGG-GGCGUUUGAGcGUCUug -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 16700 | 0.66 | 0.856486 |
Target: 5'- -gCGCCUCCCCGa--GCUC-CucGAGCg -3' miRNA: 3'- caGCGGAGGGGCguuUGAGcGu-CUUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 1022 | 0.66 | 0.856486 |
Target: 5'- -cCGCUccgcUCCCCGCGG--UCGCGGGcgGCg -3' miRNA: 3'- caGCGG----AGGGGCGUUugAGCGUCU--UG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 71322 | 0.66 | 0.88616 |
Target: 5'- -aCGCCUUCCUGCGccuGCUCGU---GCa -3' miRNA: 3'- caGCGGAGGGGCGUu--UGAGCGucuUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 47376 | 0.66 | 0.88616 |
Target: 5'- -gCGCCUCUccaCCGCAGACccgcCGCAGccGCu -3' miRNA: 3'- caGCGGAGG---GGCGUUUGa---GCGUCu-UG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 124070 | 0.66 | 0.893015 |
Target: 5'- --gGCCU-CCCGCGGACgccgucgccgcgUCGCuGGACg -3' miRNA: 3'- cagCGGAgGGGCGUUUG------------AGCGuCUUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 134383 | 0.66 | 0.879074 |
Target: 5'- -gCGCCacgUgCCCGCGAGCcggcacggcaUCGCGGAGg -3' miRNA: 3'- caGCGG---AgGGGCGUUUG----------AGCGUCUUg -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 10651 | 0.66 | 0.893015 |
Target: 5'- aUCGUCUUCCCGUcc-CUCGCcuucgcGAGCg -3' miRNA: 3'- cAGCGGAGGGGCGuuuGAGCGu-----CUUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 52014 | 0.66 | 0.879074 |
Target: 5'- uUCGaCCggcggCCCUGCGGugUC-CAGGACc -3' miRNA: 3'- cAGC-GGa----GGGGCGUUugAGcGUCUUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 68198 | 0.66 | 0.871763 |
Target: 5'- cGUC-CCUCCgCGUGGACgcugcgCGCGGAGg -3' miRNA: 3'- -CAGcGGAGGgGCGUUUGa-----GCGUCUUg -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 139719 | 0.66 | 0.87102 |
Target: 5'- --aGCCUCuUCCGCGGAgUCGCGuuucugcGGACg -3' miRNA: 3'- cagCGGAG-GGGCGUUUgAGCGU-------CUUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 115360 | 0.66 | 0.870274 |
Target: 5'- -aCGCCgguggagagcggCUCCGCGAuAUUCGCGGAGg -3' miRNA: 3'- caGCGGa-----------GGGGCGUU-UGAGCGUCUUg -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 109313 | 0.66 | 0.871763 |
Target: 5'- --gGCCgCCgCCGCGAggGCcaCGCAGAGCg -3' miRNA: 3'- cagCGGaGG-GGCGUU--UGa-GCGUCUUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 92779 | 0.66 | 0.871763 |
Target: 5'- -cCGCCUCCuucuCCGCGAccacGCcgUCGCuGGGCg -3' miRNA: 3'- caGCGGAGG----GGCGUU----UG--AGCGuCUUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 61790 | 0.66 | 0.864232 |
Target: 5'- aUCGCga--CCGCGAgccggaucugguGCUCGCAGGGCg -3' miRNA: 3'- cAGCGgaggGGCGUU------------UGAGCGUCUUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 50391 | 0.66 | 0.871763 |
Target: 5'- cGUCuGCCUCgucgCCCGCcGGCUgCGCGGcgGGCg -3' miRNA: 3'- -CAG-CGGAG----GGGCGuUUGA-GCGUC--UUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 29779 | 0.66 | 0.88616 |
Target: 5'- -gCGCaccgCCUgCGCGAACUCGCGGcuGGCa -3' miRNA: 3'- caGCGga--GGG-GCGUUUGAGCGUC--UUG- -5' |
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25027 | 5' | -56 | NC_005336.1 | + | 26985 | 0.66 | 0.871763 |
Target: 5'- -cCGCCUCCUCGagguccGCgUCGgAGAGCa -3' miRNA: 3'- caGCGGAGGGGCguu---UG-AGCgUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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