miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25028 3' -53.7 NC_005336.1 + 2464 0.66 0.94839
Target:  5'- cGCUCuCUUGCUCuGAGcGAGuGAGUGa -3'
miRNA:   3'- -UGAGcGAGCGAGcCUCaUUCuCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 2464 0.66 0.94839
Target:  5'- cGCUCuCUUGCUCuGAGcGAGuGAGUGa -3'
miRNA:   3'- -UGAGcGAGCGAGcCUCaUUCuCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 132103 0.67 0.928827
Target:  5'- gACUCuCUCaugGCUCGGAugGAGAGAGa- -3'
miRNA:   3'- -UGAGcGAG---CGAGCCUcaUUCUCUCau -5'
25028 3' -53.7 NC_005336.1 + 136842 0.68 0.86241
Target:  5'- gACUCacgcaCUCaCUCGGAGUAAGcGAGUGc -3'
miRNA:   3'- -UGAGc----GAGcGAGCCUCAUUCuCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 136842 0.68 0.86241
Target:  5'- gACUCacgcaCUCaCUCGGAGUAAGcGAGUGc -3'
miRNA:   3'- -UGAGc----GAGcGAGCCUCAUUCuCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 137334 0.7 0.764637
Target:  5'- cACUCaCUCGCUCaGAGcAAGAGAGc- -3'
miRNA:   3'- -UGAGcGAGCGAGcCUCaUUCUCUCau -5'
25028 3' -53.7 NC_005336.1 + 137334 0.7 0.764637
Target:  5'- cACUCaCUCGCUCaGAGcAAGAGAGc- -3'
miRNA:   3'- -UGAGcGAGCGAGcCUCaUUCUCUCau -5'
25028 3' -53.7 NC_005336.1 + 138193 0.71 0.744861
Target:  5'- cGCUCGCUCGCUCGGAcGcAGGucGGc- -3'
miRNA:   3'- -UGAGCGAGCGAGCCU-CaUUCucUCau -5'
25028 3' -53.7 NC_005336.1 + 138193 0.71 0.744861
Target:  5'- cGCUCGCUCGCUCGGAcGcAGGucGGc- -3'
miRNA:   3'- -UGAGCGAGCGAGCCU-CaUUCucUCau -5'
25028 3' -53.7 NC_005336.1 + 136894 0.71 0.734811
Target:  5'- cACUCacuCUCGgaUCGaGAGUGAGAGAGUGa -3'
miRNA:   3'- -UGAGc--GAGCg-AGC-CUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 136894 0.71 0.734811
Target:  5'- cACUCacuCUCGgaUCGaGAGUGAGAGAGUGa -3'
miRNA:   3'- -UGAGc--GAGCg-AGC-CUCAUUCUCUCAU- -5'
25028 3' -53.7 NC_005336.1 + 137198 0.72 0.704131
Target:  5'- -gUCGaccaCUCGCcCGGAGUAAGAGAGc- -3'
miRNA:   3'- ugAGC----GAGCGaGCCUCAUUCUCUCau -5'
25028 3' -53.7 NC_005336.1 + 111367 0.72 0.704131
Target:  5'- --cCGCgagUGCUCGGAGUcGGGAGAGg- -3'
miRNA:   3'- ugaGCGa--GCGAGCCUCA-UUCUCUCau -5'
25028 3' -53.7 NC_005336.1 + 137198 0.72 0.704131
Target:  5'- -gUCGaccaCUCGCcCGGAGUAAGAGAGc- -3'
miRNA:   3'- ugAGC----GAGCGaGCCUCAUUCUCUCau -5'
25028 3' -53.7 NC_005336.1 + 137054 0.72 0.683338
Target:  5'- cACUCuCUCaCUCGGGGUGAGAGAa-- -3'
miRNA:   3'- -UGAGcGAGcGAGCCUCAUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137054 0.72 0.683338
Target:  5'- cACUCuCUCaCUCGGGGUGAGAGAa-- -3'
miRNA:   3'- -UGAGcGAGcGAGCCUCAUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137264 0.73 0.62018
Target:  5'- cACUCaCUCaCUCGGAGUAAGAGAu-- -3'
miRNA:   3'- -UGAGcGAGcGAGCCUCAUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137264 0.73 0.62018
Target:  5'- cACUCaCUCaCUCGGAGUAAGAGAu-- -3'
miRNA:   3'- -UGAGcGAGcGAGCCUCAUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137139 0.74 0.54702
Target:  5'- cACUCGCUCGCucacucacUCGGGGcGAGAGAa-- -3'
miRNA:   3'- -UGAGCGAGCG--------AGCCUCaUUCUCUcau -5'
25028 3' -53.7 NC_005336.1 + 137139 0.74 0.54702
Target:  5'- cACUCGCUCGCucacucacUCGGGGcGAGAGAa-- -3'
miRNA:   3'- -UGAGCGAGCG--------AGCCUCaUUCUCUcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.