miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25028 5' -55.4 NC_005336.1 + 107768 0.66 0.916152
Target:  5'- ---cGCGGgcgUGAUCGCGuCGCGuGCu- -3'
miRNA:   3'- caauCGUCa--ACUGGCGC-GCGCuCGcu -5'
25028 5' -55.4 NC_005336.1 + 76996 0.66 0.916152
Target:  5'- --cGGCGcaUGACCGgGUGCGAgaccGCGGc -3'
miRNA:   3'- caaUCGUcaACUGGCgCGCGCU----CGCU- -5'
25028 5' -55.4 NC_005336.1 + 123758 0.66 0.916152
Target:  5'- --cGGCGGgagaggUGGCCuGCGCucgcagccggGUGAGCGGg -3'
miRNA:   3'- caaUCGUCa-----ACUGG-CGCG----------CGCUCGCU- -5'
25028 5' -55.4 NC_005336.1 + 20070 0.66 0.916152
Target:  5'- ---cGCAGggcGACCGCGgGCucGGCGGc -3'
miRNA:   3'- caauCGUCaa-CUGGCGCgCGc-UCGCU- -5'
25028 5' -55.4 NC_005336.1 + 9671 0.66 0.916152
Target:  5'- --cAGCcGgcGGCaCGCGCGCGGGUu- -3'
miRNA:   3'- caaUCGuCaaCUG-GCGCGCGCUCGcu -5'
25028 5' -55.4 NC_005336.1 + 15907 0.66 0.916152
Target:  5'- --aGGCAGgugUGGCCGUagugGuUGCGGGCGu -3'
miRNA:   3'- caaUCGUCa--ACUGGCG----C-GCGCUCGCu -5'
25028 5' -55.4 NC_005336.1 + 119098 0.66 0.916152
Target:  5'- ---cGCGGUcaagugcgUGGCCGCGCGgGuGCc- -3'
miRNA:   3'- caauCGUCA--------ACUGGCGCGCgCuCGcu -5'
25028 5' -55.4 NC_005336.1 + 91709 0.66 0.910165
Target:  5'- --gAGCAGgu--CC-CGCGCGAGCa- -3'
miRNA:   3'- caaUCGUCaacuGGcGCGCGCUCGcu -5'
25028 5' -55.4 NC_005336.1 + 8183 0.66 0.910165
Target:  5'- --cGGCAGgaagaacaucGACCGCGCGgCGGGaaCGAc -3'
miRNA:   3'- caaUCGUCaa--------CUGGCGCGC-GCUC--GCU- -5'
25028 5' -55.4 NC_005336.1 + 71546 0.66 0.910165
Target:  5'- --cAGCGGcUGGCCGCGCacuucaacgugcGCGuGCa- -3'
miRNA:   3'- caaUCGUCaACUGGCGCG------------CGCuCGcu -5'
25028 5' -55.4 NC_005336.1 + 12623 0.66 0.910165
Target:  5'- --gGGCGGgcugGAUCGCGCGCc-GCGu -3'
miRNA:   3'- caaUCGUCaa--CUGGCGCGCGcuCGCu -5'
25028 5' -55.4 NC_005336.1 + 83247 0.66 0.910165
Target:  5'- --------aUGACCuuGCGCGCGAGCGu -3'
miRNA:   3'- caaucgucaACUGG--CGCGCGCUCGCu -5'
25028 5' -55.4 NC_005336.1 + 95974 0.66 0.90708
Target:  5'- --gGGCGGgccucgcacgaGCCGCGCGCGgcucgccagcucuGGCGAg -3'
miRNA:   3'- caaUCGUCaac--------UGGCGCGCGC-------------UCGCU- -5'
25028 5' -55.4 NC_005336.1 + 88665 0.66 0.906456
Target:  5'- ---uGCAGacccgcguaccgagUGACCa-GCGCGAGCGAg -3'
miRNA:   3'- caauCGUCa-------------ACUGGcgCGCGCUCGCU- -5'
25028 5' -55.4 NC_005336.1 + 52046 0.66 0.903934
Target:  5'- --cAGCAGUcgccgGACaaGCGCGCGgaggugGGCGAc -3'
miRNA:   3'- caaUCGUCAa----CUGg-CGCGCGC------UCGCU- -5'
25028 5' -55.4 NC_005336.1 + 9302 0.66 0.903934
Target:  5'- --gAGCAGgcu-CCGCG-GCGGGCGc -3'
miRNA:   3'- caaUCGUCaacuGGCGCgCGCUCGCu -5'
25028 5' -55.4 NC_005336.1 + 35996 0.66 0.903298
Target:  5'- ---uGCGGUcggucucUGugCGCGuCGCGcAGCGGu -3'
miRNA:   3'- caauCGUCA-------ACugGCGC-GCGC-UCGCU- -5'
25028 5' -55.4 NC_005336.1 + 3744 0.66 0.897464
Target:  5'- ---cGCGGUgagGgaaGCCgGCGCGCGGGCu- -3'
miRNA:   3'- caauCGUCAa--C---UGG-CGCGCGCUCGcu -5'
25028 5' -55.4 NC_005336.1 + 130053 0.66 0.897464
Target:  5'- ---cGCuGcUGGCUGCcgGCGCGAGCGu -3'
miRNA:   3'- caauCGuCaACUGGCG--CGCGCUCGCu -5'
25028 5' -55.4 NC_005336.1 + 88480 0.66 0.897464
Target:  5'- --cAGCGug-GACgcgaCGCGCGCGGGCGc -3'
miRNA:   3'- caaUCGUcaaCUG----GCGCGCGCUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.