Results 1 - 20 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 138032 | 0.68 | 0.715001 |
Target: 5'- -aCACUCGCuCGC-CaCUCACUCGGa- -3' miRNA: 3'- ugGUGAGCGcGUGaG-GAGUGAGCCag -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 138032 | 0.68 | 0.715001 |
Target: 5'- -aCACUCGCuCGC-CaCUCACUCGGa- -3' miRNA: 3'- ugGUGAGCGcGUGaG-GAGUGAGCCag -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 137652 | 1.08 | 0.001823 |
Target: 5'- aACCACUCGCGCACUCCUCACUCGGUCu -3' miRNA: 3'- -UGGUGAGCGCGUGAGGAGUGAGCCAG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 137652 | 1.08 | 0.001823 |
Target: 5'- aACCACUCGCGCACUCCUCACUCGGUCu -3' miRNA: 3'- -UGGUGAGCGCGUGAGGAGUGAGCCAG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 137137 | 0.77 | 0.233806 |
Target: 5'- cUCACUCGCuCGCUCaCUCACUCGGg- -3' miRNA: 3'- uGGUGAGCGcGUGAG-GAGUGAGCCag -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 137137 | 0.77 | 0.233806 |
Target: 5'- cUCACUCGCuCGCUCaCUCACUCGGg- -3' miRNA: 3'- uGGUGAGCGcGUGAG-GAGUGAGCCag -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 137092 | 0.69 | 0.624094 |
Target: 5'- -aCugUUaGCGCACUCgCUCACUCGcUCg -3' miRNA: 3'- ugGugAG-CGCGUGAG-GAGUGAGCcAG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 137092 | 0.69 | 0.624094 |
Target: 5'- -aCugUUaGCGCACUCgCUCACUCGcUCg -3' miRNA: 3'- ugGugAG-CGCGUGAG-GAGUGAGCcAG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 136243 | 0.68 | 0.695064 |
Target: 5'- gGCgCGCUCGCGCugguggcggcggGCUUCgCGCUCGG-Cg -3' miRNA: 3'- -UG-GUGAGCGCG------------UGAGGaGUGAGCCaG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 136243 | 0.68 | 0.695064 |
Target: 5'- gGCgCGCUCGCGCugguggcggcggGCUUCgCGCUCGG-Cg -3' miRNA: 3'- -UG-GUGAGCGCG------------UGAGGaGUGAGCCaG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 135757 | 0.67 | 0.76346 |
Target: 5'- uCCGCgCGCgGCGCcCCUCGC-CGGUg -3' miRNA: 3'- uGGUGaGCG-CGUGaGGAGUGaGCCAg -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 134096 | 0.67 | 0.772842 |
Target: 5'- gACgCGCUCGCGCuggcCUCCgcggCGCUCGc-- -3' miRNA: 3'- -UG-GUGAGCGCGu---GAGGa---GUGAGCcag -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 132598 | 0.7 | 0.570393 |
Target: 5'- -aCugUCGCGCgagcucuaucacgaGCUCCg-ACUCGGUCu -3' miRNA: 3'- ugGugAGCGCG--------------UGAGGagUGAGCCAG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 130164 | 0.66 | 0.791223 |
Target: 5'- -gCGCUCGCGCACcaggCCgCGCUCGcG-Cg -3' miRNA: 3'- ugGUGAGCGCGUGa---GGaGUGAGC-CaG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 128266 | 0.68 | 0.682997 |
Target: 5'- gGCCGCgcgcguggagcgCGUGCGCcgcaagUCCUCGCU-GGUCg -3' miRNA: 3'- -UGGUGa-----------GCGCGUG------AGGAGUGAgCCAG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 127562 | 0.67 | 0.772842 |
Target: 5'- cCCGCUCGCGCGCgacaUCAUcCGG-Cg -3' miRNA: 3'- uGGUGAGCGCGUGagg-AGUGaGCCaG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 108980 | 0.72 | 0.448118 |
Target: 5'- aGCCGCUgGUGCGCgCC-CGCgCGGUCg -3' miRNA: 3'- -UGGUGAgCGCGUGaGGaGUGaGCCAG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 104457 | 0.71 | 0.543437 |
Target: 5'- cGCCGCg-GCGCGC-CCUCGCUgGG-Ca -3' miRNA: 3'- -UGGUGagCGCGUGaGGAGUGAgCCaG- -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 103449 | 0.66 | 0.821133 |
Target: 5'- gGCCGCgggCGUGCACgucugcgacguguucUUCUCGC-CGGUg -3' miRNA: 3'- -UGGUGa--GCGCGUG---------------AGGAGUGaGCCAg -5' |
|||||||
25029 | 3' | -57.9 | NC_005336.1 | + | 100983 | 0.73 | 0.430161 |
Target: 5'- gACCGCga--GCGCUCCUCGCU-GGUCu -3' miRNA: 3'- -UGGUGagcgCGUGAGGAGUGAgCCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home