miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25031 3' -45.5 NC_005336.1 + 1841 0.66 0.999969
Target:  5'- -cGACuGUcGACUCGuuaacugucCUCuACUCUCUCa -3'
miRNA:   3'- uaUUGuCAaUUGAGU---------GAG-UGAGAGAG- -5'
25031 3' -45.5 NC_005336.1 + 1841 0.66 0.999969
Target:  5'- -cGACuGUcGACUCGuuaacugucCUCuACUCUCUCa -3'
miRNA:   3'- uaUUGuCAaUUGAGU---------GAG-UGAGAGAG- -5'
25031 3' -45.5 NC_005336.1 + 137770 0.66 0.999942
Target:  5'- uUAACAGguuaaUCACUCACUCa--- -3'
miRNA:   3'- uAUUGUCaauugAGUGAGUGAGagag -5'
25031 3' -45.5 NC_005336.1 + 137770 0.66 0.999942
Target:  5'- uUAACAGguuaaUCACUCACUCa--- -3'
miRNA:   3'- uAUUGUCaauugAGUGAGUGAGagag -5'
25031 3' -45.5 NC_005336.1 + 44986 0.66 0.999942
Target:  5'- cUGGCAGUUcccGGCgCcCUCGCUCUCa- -3'
miRNA:   3'- uAUUGUCAA---UUGaGuGAGUGAGAGag -5'
25031 3' -45.5 NC_005336.1 + 128703 0.67 0.999821
Target:  5'- -gAACAGUaugcuACUCACacagUCGCUC-CUCg -3'
miRNA:   3'- uaUUGUCAau---UGAGUG----AGUGAGaGAG- -5'
25031 3' -45.5 NC_005336.1 + 136802 0.67 0.999821
Target:  5'- --cGCGG---ACUCACUCACUCUg-- -3'
miRNA:   3'- uauUGUCaauUGAGUGAGUGAGAgag -5'
25031 3' -45.5 NC_005336.1 + 136802 0.67 0.999821
Target:  5'- --cGCGG---ACUCACUCACUCUg-- -3'
miRNA:   3'- uauUGUCaauUGAGUGAGUGAGAgag -5'
25031 3' -45.5 NC_005336.1 + 103214 0.68 0.999388
Target:  5'- --cGCAGgucgGGCUCAuCUCGCagCUCUCc -3'
miRNA:   3'- uauUGUCaa--UUGAGU-GAGUGa-GAGAG- -5'
25031 3' -45.5 NC_005336.1 + 137642 0.69 0.998828
Target:  5'- uUAGCgAGUUAaccACUCGCgCACUC-CUCa -3'
miRNA:   3'- uAUUG-UCAAU---UGAGUGaGUGAGaGAG- -5'
25031 3' -45.5 NC_005336.1 + 137642 0.69 0.998828
Target:  5'- uUAGCgAGUUAaccACUCGCgCACUC-CUCa -3'
miRNA:   3'- uAUUG-UCAAU---UGAGUGaGUGAGaGAG- -5'
25031 3' -45.5 NC_005336.1 + 77618 0.69 0.998828
Target:  5'- -aAGCGGUccACaaACUCGCUCUCUa -3'
miRNA:   3'- uaUUGUCAauUGagUGAGUGAGAGAg -5'
25031 3' -45.5 NC_005336.1 + 1737 0.69 0.998248
Target:  5'- uUAACuuaUUAACUCGucCUCuACUCUCUCa -3'
miRNA:   3'- uAUUGuc-AAUUGAGU--GAG-UGAGAGAG- -5'
25031 3' -45.5 NC_005336.1 + 1737 0.69 0.998248
Target:  5'- uUAACuuaUUAACUCGucCUCuACUCUCUCa -3'
miRNA:   3'- uAUUGuc-AAUUGAGU--GAG-UGAGAGAG- -5'
25031 3' -45.5 NC_005336.1 + 136835 0.7 0.997444
Target:  5'- --uACcGUUGACUCACgCACUCaCUCg -3'
miRNA:   3'- uauUGuCAAUUGAGUGaGUGAGaGAG- -5'
25031 3' -45.5 NC_005336.1 + 136835 0.7 0.997444
Target:  5'- --uACcGUUGACUCACgCACUCaCUCg -3'
miRNA:   3'- uauUGuCAAUUGAGUGaGUGAGaGAG- -5'
25031 3' -45.5 NC_005336.1 + 137842 0.7 0.994908
Target:  5'- uUAACAGguuaaUCACUCACUCacaCUCa -3'
miRNA:   3'- uAUUGUCaauugAGUGAGUGAGa--GAG- -5'
25031 3' -45.5 NC_005336.1 + 137842 0.7 0.994908
Target:  5'- uUAACAGguuaaUCACUCACUCacaCUCa -3'
miRNA:   3'- uAUUGUCaauugAGUGAGUGAGa--GAG- -5'
25031 3' -45.5 NC_005336.1 + 136979 0.76 0.926269
Target:  5'- -cAACAGgcAACUCGCUCGCUCg--- -3'
miRNA:   3'- uaUUGUCaaUUGAGUGAGUGAGagag -5'
25031 3' -45.5 NC_005336.1 + 136979 0.76 0.926269
Target:  5'- -cAACAGgcAACUCGCUCGCUCg--- -3'
miRNA:   3'- uaUUGUCaaUUGAGUGAGUGAGagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.