miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25031 5' -47.1 NC_005336.1 + 9619 0.66 0.999524
Target:  5'- gGAGGGGAAGAugcGCGCGAGcgCGGcCUGg- -3'
miRNA:   3'- -CUCUCUUUCU---CGUGUUCa-GUU-GACaa -5'
25031 5' -47.1 NC_005336.1 + 34463 0.66 0.999251
Target:  5'- -cGAGAccGAGCACG-GUCAGCg--- -3'
miRNA:   3'- cuCUCUuuCUCGUGUuCAGUUGacaa -5'
25031 5' -47.1 NC_005336.1 + 2477 0.67 0.998853
Target:  5'- uGAGcGAGuGAGUgaGCGAGUUGACUGUUc -3'
miRNA:   3'- -CUCuCUUuCUCG--UGUUCAGUUGACAA- -5'
25031 5' -47.1 NC_005336.1 + 136955 0.67 0.998853
Target:  5'- aAGAGuAAGAGCGCGauaacaAGUCAACa--- -3'
miRNA:   3'- cUCUCuUUCUCGUGU------UCAGUUGacaa -5'
25031 5' -47.1 NC_005336.1 + 2477 0.67 0.998853
Target:  5'- uGAGcGAGuGAGUgaGCGAGUUGACUGUUc -3'
miRNA:   3'- -CUCuCUUuCUCG--UGUUCAGUUGACAA- -5'
25031 5' -47.1 NC_005336.1 + 136955 0.67 0.998853
Target:  5'- aAGAGuAAGAGCGCGauaacaAGUCAACa--- -3'
miRNA:   3'- cUCUCuUUCUCGUGU------UCAGUUGacaa -5'
25031 5' -47.1 NC_005336.1 + 137998 0.67 0.998255
Target:  5'- gGAGuGAGAGAGUagagaacacgauaACGAGUCGACa--- -3'
miRNA:   3'- -CUCuCUUUCUCG-------------UGUUCAGUUGacaa -5'
25031 5' -47.1 NC_005336.1 + 137998 0.67 0.998255
Target:  5'- gGAGuGAGAGAGUagagaacacgauaACGAGUCGACa--- -3'
miRNA:   3'- -CUCuCUUUCUCG-------------UGUUCAGUUGacaa -5'
25031 5' -47.1 NC_005336.1 + 126146 0.67 0.997928
Target:  5'- aGGAGGAAGAGCGCGAcGUCcucGGCg--- -3'
miRNA:   3'- cUCUCUUUCUCGUGUU-CAG---UUGacaa -5'
25031 5' -47.1 NC_005336.1 + 138057 0.67 0.997928
Target:  5'- uGAGAGAGuAGAGgACGAGUUAAUa--- -3'
miRNA:   3'- -CUCUCUU-UCUCgUGUUCAGUUGacaa -5'
25031 5' -47.1 NC_005336.1 + 138057 0.67 0.997928
Target:  5'- uGAGAGAGuAGAGgACGAGUUAAUa--- -3'
miRNA:   3'- -CUCUCUU-UCUCgUGUUCAGUUGacaa -5'
25031 5' -47.1 NC_005336.1 + 9498 0.68 0.997013
Target:  5'- -cGAGGAAGAGCGCAGccUCGACcaUGUUc -3'
miRNA:   3'- cuCUCUUUCUCGUGUUc-AGUUG--ACAA- -5'
25031 5' -47.1 NC_005336.1 + 137944 0.68 0.996444
Target:  5'- gGAGuGAGAGAGUagaggacaguuaACGAGUCGACaGUc -3'
miRNA:   3'- -CUCuCUUUCUCG------------UGUUCAGUUGaCAa -5'
25031 5' -47.1 NC_005336.1 + 137944 0.68 0.996444
Target:  5'- gGAGuGAGAGAGUagaggacaguuaACGAGUCGACaGUc -3'
miRNA:   3'- -CUCuCUUUCUCG------------UGUUCAGUUGaCAa -5'
25031 5' -47.1 NC_005336.1 + 139107 0.69 0.993205
Target:  5'- cGGAGGAgcgcGGAGgGCGGGUCAGCUc-- -3'
miRNA:   3'- cUCUCUU----UCUCgUGUUCAGUUGAcaa -5'
25031 5' -47.1 NC_005336.1 + 139107 0.69 0.993205
Target:  5'- cGGAGGAgcgcGGAGgGCGGGUCAGCUc-- -3'
miRNA:   3'- cUCUCUU----UCUCgUGUUCAGUUGAcaa -5'
25031 5' -47.1 NC_005336.1 + 137232 0.69 0.990871
Target:  5'- cGAGAGAAcGGAuaGCGAGUCGACaGUc -3'
miRNA:   3'- -CUCUCUU-UCUcgUGUUCAGUUGaCAa -5'
25031 5' -47.1 NC_005336.1 + 137232 0.69 0.990871
Target:  5'- cGAGAGAAcGGAuaGCGAGUCGACaGUc -3'
miRNA:   3'- -CUCUCUU-UCUcgUGUUCAGUUGaCAa -5'
25031 5' -47.1 NC_005336.1 + 2919 0.71 0.977489
Target:  5'- cGAGAGu--GAGU--GAGUCGACUGUUg -3'
miRNA:   3'- -CUCUCuuuCUCGugUUCAGUUGACAA- -5'
25031 5' -47.1 NC_005336.1 + 2919 0.71 0.977489
Target:  5'- cGAGAGu--GAGU--GAGUCGACUGUUg -3'
miRNA:   3'- -CUCUCuuuCUCGugUUCAGUUGACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.