miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25032 5' -47.5 NC_005336.1 + 137683 0.66 0.999506
Target:  5'- aGGAGAGaacGAGuGACGAGUCGACGa-- -3'
miRNA:   3'- cUCUCUCa--CUC-UUGUUCAGUUGUcag -5'
25032 5' -47.5 NC_005336.1 + 137683 0.66 0.999506
Target:  5'- aGGAGAGaacGAGuGACGAGUCGACGa-- -3'
miRNA:   3'- cUCUCUCa--CUC-UUGUUCAGUUGUcag -5'
25032 5' -47.5 NC_005336.1 + 137282 0.66 0.999339
Target:  5'- aAGAGAucaaGUuaacaaguuaacaaGAGAACGAGagAACAGUCa -3'
miRNA:   3'- cUCUCU----CA--------------CUCUUGUUCagUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 137282 0.66 0.999339
Target:  5'- aAGAGAucaaGUuaacaaguuaacaaGAGAACGAGagAACAGUCa -3'
miRNA:   3'- cUCUCU----CA--------------CUCUUGUUCagUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 1771 0.66 0.99923
Target:  5'- cGAGuGAGUGGcGAGCGAguGUCGACucGUUa -3'
miRNA:   3'- -CUCuCUCACU-CUUGUU--CAGUUGu-CAG- -5'
25032 5' -47.5 NC_005336.1 + 1771 0.66 0.99923
Target:  5'- cGAGuGAGUGGcGAGCGAguGUCGACucGUUa -3'
miRNA:   3'- -CUCuCUCACU-CUUGUU--CAGUUGu-CAG- -5'
25032 5' -47.5 NC_005336.1 + 31744 0.66 0.99923
Target:  5'- uGGAGAGau-GAGCAAGagCAACGGUUc -3'
miRNA:   3'- cUCUCUCacuCUUGUUCa-GUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 45632 0.67 0.998831
Target:  5'- -cGGGGGcGGGAACAGGcgCAGCAGc- -3'
miRNA:   3'- cuCUCUCaCUCUUGUUCa-GUUGUCag -5'
25032 5' -47.5 NC_005336.1 + 1826 0.67 0.998573
Target:  5'- cGAGcGAGUGAGu----GUCGACuGUCg -3'
miRNA:   3'- -CUCuCUCACUCuuguuCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 1826 0.67 0.998573
Target:  5'- cGAGcGAGUGAGu----GUCGACuGUCg -3'
miRNA:   3'- -CUCuCUCACUCuuguuCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 2547 0.68 0.995801
Target:  5'- cGAGuGAGUGAGu--GAGUgGACuGUCg -3'
miRNA:   3'- -CUCuCUCACUCuugUUCAgUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 2547 0.68 0.995801
Target:  5'- cGAGuGAGUGAGu--GAGUgGACuGUCg -3'
miRNA:   3'- -CUCuCUCACUCuugUUCAgUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 125856 0.68 0.995064
Target:  5'- aGAGAGcGUG-GAGCAGGacCAGCAcGUCg -3'
miRNA:   3'- -CUCUCuCACuCUUGUUCa-GUUGU-CAG- -5'
25032 5' -47.5 NC_005336.1 + 91147 0.69 0.994225
Target:  5'- aGAcGGAGcucaUGaAGAGCGAGUCGGCGGUg -3'
miRNA:   3'- -CUcUCUC----AC-UCUUGUUCAGUUGUCAg -5'
25032 5' -47.5 NC_005336.1 + 92493 0.69 0.992647
Target:  5'- gGAGAGAGcgaUGAGAGCGAGagCGAggaggacgacaucucCAGUCc -3'
miRNA:   3'- -CUCUCUC---ACUCUUGUUCa-GUU---------------GUCAG- -5'
25032 5' -47.5 NC_005336.1 + 137608 0.69 0.989656
Target:  5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3'
miRNA:   3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5'
25032 5' -47.5 NC_005336.1 + 137456 0.69 0.989656
Target:  5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3'
miRNA:   3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5'
25032 5' -47.5 NC_005336.1 + 137456 0.69 0.989656
Target:  5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3'
miRNA:   3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5'
25032 5' -47.5 NC_005336.1 + 137608 0.69 0.989656
Target:  5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3'
miRNA:   3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5'
25032 5' -47.5 NC_005336.1 + 2477 0.7 0.9865
Target:  5'- uGAGcGAGUGAguGAGCGAGUUGACuGUUc -3'
miRNA:   3'- -CUCuCUCACU--CUUGUUCAGUUGuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.