miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25032 5' -47.5 NC_005336.1 + 137683 0.66 0.999506
Target:  5'- aGGAGAGaacGAGuGACGAGUCGACGa-- -3'
miRNA:   3'- cUCUCUCa--CUC-UUGUUCAGUUGUcag -5'
25032 5' -47.5 NC_005336.1 + 138002 0.78 0.715847
Target:  5'- uGAGAGAGUaGAGAACAcgauaacgAGUCGACAcUCg -3'
miRNA:   3'- -CUCUCUCA-CUCUUGU--------UCAGUUGUcAG- -5'
25032 5' -47.5 NC_005336.1 + 138057 0.81 0.595281
Target:  5'- uGAGAGAGUaGAGGACGAGUUAAUaAGUUa -3'
miRNA:   3'- -CUCUCUCA-CUCUUGUUCAGUUG-UCAG- -5'
25032 5' -47.5 NC_005336.1 + 136915 1.12 0.011263
Target:  5'- uGAGAGAGUGAGAACAAGUCAACAGUCa -3'
miRNA:   3'- -CUCUCUCACUCUUGUUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 1826 0.67 0.998573
Target:  5'- cGAGcGAGUGAGu----GUCGACuGUCg -3'
miRNA:   3'- -CUCuCUCACUCuuguuCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 2547 0.68 0.995801
Target:  5'- cGAGuGAGUGAGu--GAGUgGACuGUCg -3'
miRNA:   3'- -CUCuCUCACUCuugUUCAgUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 137456 0.69 0.989656
Target:  5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3'
miRNA:   3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5'
25032 5' -47.5 NC_005336.1 + 2477 0.7 0.9865
Target:  5'- uGAGcGAGUGAguGAGCGAGUUGACuGUUc -3'
miRNA:   3'- -CUCuCUCACU--CUUGUUCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 137164 0.71 0.972563
Target:  5'- cGAGAGAacaaGUuuacGAGuuuACGAGUUAACGGUCg -3'
miRNA:   3'- -CUCUCU----CA----CUCu--UGUUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 2761 0.74 0.899013
Target:  5'- uGAGAGAGUGAGu--GAGUUAACuGUUa -3'
miRNA:   3'- -CUCUCUCACUCuugUUCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 2919 0.72 0.958796
Target:  5'- -cGAGAGUGAGu--GAGUCGACuGUUg -3'
miRNA:   3'- cuCUCUCACUCuugUUCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 137744 0.71 0.975409
Target:  5'- aAGAGAGcaGAGGACGAGUUAAUaAGUUa -3'
miRNA:   3'- cUCUCUCa-CUCUUGUUCAGUUG-UCAG- -5'
25032 5' -47.5 NC_005336.1 + 137282 0.66 0.999339
Target:  5'- aAGAGAucaaGUuaacaaguuaacaaGAGAACGAGagAACAGUCa -3'
miRNA:   3'- cUCUCU----CA--------------CUCUUGUUCagUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 137071 0.72 0.954723
Target:  5'- uGAGAGAaaGAGcACAAGUCAACuGUUa -3'
miRNA:   3'- -CUCUCUcaCUCuUGUUCAGUUGuCAG- -5'
25032 5' -47.5 NC_005336.1 + 1771 0.66 0.99923
Target:  5'- cGAGuGAGUGGcGAGCGAguGUCGACucGUUa -3'
miRNA:   3'- -CUCuCUCACU-CUUGUU--CAGUUGu-CAG- -5'
25032 5' -47.5 NC_005336.1 + 2965 0.7 0.984668
Target:  5'- ---cGAGUGAGuGCGugAGUCAACGGUa -3'
miRNA:   3'- cucuCUCACUCuUGU--UCAGUUGUCAg -5'
25032 5' -47.5 NC_005336.1 + 1887 0.72 0.950386
Target:  5'- uGAGAGGGUGucAACuuGUCAACGcGUCa -3'
miRNA:   3'- -CUCUCUCACucUUGuuCAGUUGU-CAG- -5'
25032 5' -47.5 NC_005336.1 + 137232 0.79 0.694243
Target:  5'- cGAGAGAacgGAuAGCGAGUCGACAGUCc -3'
miRNA:   3'- -CUCUCUca-CUcUUGUUCAGUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 31744 0.66 0.99923
Target:  5'- uGGAGAGau-GAGCAAGagCAACGGUUc -3'
miRNA:   3'- cUCUCUCacuCUUGUUCa-GUUGUCAG- -5'
25032 5' -47.5 NC_005336.1 + 137608 0.69 0.989656
Target:  5'- aAGAGAGUGcAGGACAagauaauaAGUUAACgAGUUa -3'
miRNA:   3'- cUCUCUCAC-UCUUGU--------UCAGUUG-UCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.