miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25034 5' -51.1 NC_005336.1 + 88676 0.66 0.991961
Target:  5'- gUACCGagugACCAGCgCGagcGAGGAgccgacCUCCCu -3'
miRNA:   3'- gAUGGUa---UGGUUG-GU---CUCCUa-----GAGGG- -5'
25034 5' -51.1 NC_005336.1 + 14066 0.66 0.99078
Target:  5'- -gGCCGcGCCGGCCucGAGcaccuGGUCUCCg -3'
miRNA:   3'- gaUGGUaUGGUUGGu-CUC-----CUAGAGGg -5'
25034 5' -51.1 NC_005336.1 + 81197 0.66 0.99078
Target:  5'- -cGCCGUGCU-GCgGGGGGA-CUCCg -3'
miRNA:   3'- gaUGGUAUGGuUGgUCUCCUaGAGGg -5'
25034 5' -51.1 NC_005336.1 + 78620 0.66 0.989466
Target:  5'- gUGCgCAcGCCGggcgucuuGCC-GAGGAUCUCgCCg -3'
miRNA:   3'- gAUG-GUaUGGU--------UGGuCUCCUAGAG-GG- -5'
25034 5' -51.1 NC_005336.1 + 129485 0.66 0.989466
Target:  5'- -cGCCaAUAUCGACgUGGAGGuUCUCCg -3'
miRNA:   3'- gaUGG-UAUGGUUG-GUCUCCuAGAGGg -5'
25034 5' -51.1 NC_005336.1 + 106448 0.66 0.989466
Target:  5'- --cCCGUACC-ACCAGuacauGGGAaCUCCg -3'
miRNA:   3'- gauGGUAUGGuUGGUC-----UCCUaGAGGg -5'
25034 5' -51.1 NC_005336.1 + 85009 0.66 0.988901
Target:  5'- gCUACCAccugacguacaugACCGACCucuGGAagUCCCa -3'
miRNA:   3'- -GAUGGUa------------UGGUUGGucuCCUagAGGG- -5'
25034 5' -51.1 NC_005336.1 + 10725 0.66 0.98861
Target:  5'- -gGCC-UGCCGGCCAG-GGAcgccgccacacaccuUCcCCCa -3'
miRNA:   3'- gaUGGuAUGGUUGGUCuCCU---------------AGaGGG- -5'
25034 5' -51.1 NC_005336.1 + 105533 0.66 0.986404
Target:  5'- -cGCCGcGCgCGugcGCCGGGGGcaggCUCCCg -3'
miRNA:   3'- gaUGGUaUG-GU---UGGUCUCCua--GAGGG- -5'
25034 5' -51.1 NC_005336.1 + 75130 0.67 0.984637
Target:  5'- -cACCAgcgcggACCAGCCGGAGucgucCUCCa -3'
miRNA:   3'- gaUGGUa-----UGGUUGGUCUCcua--GAGGg -5'
25034 5' -51.1 NC_005336.1 + 118746 0.67 0.984637
Target:  5'- -cAgCAUGCCaAGCguGAGGcuaCUCCCg -3'
miRNA:   3'- gaUgGUAUGG-UUGguCUCCua-GAGGG- -5'
25034 5' -51.1 NC_005336.1 + 89622 0.67 0.984263
Target:  5'- -cGCCAU-CCGACCGGAGGuugagguugcgCUUCa -3'
miRNA:   3'- gaUGGUAuGGUUGGUCUCCua---------GAGGg -5'
25034 5' -51.1 NC_005336.1 + 14335 0.67 0.9827
Target:  5'- --cCCAUcGCagcgaGGCCAGGcGGAUCUCCg -3'
miRNA:   3'- gauGGUA-UGg----UUGGUCU-CCUAGAGGg -5'
25034 5' -51.1 NC_005336.1 + 26950 0.67 0.9827
Target:  5'- -cGCCGgguCCAGgCAGAccgGGAUCUCgCg -3'
miRNA:   3'- gaUGGUau-GGUUgGUCU---CCUAGAGgG- -5'
25034 5' -51.1 NC_005336.1 + 131110 0.67 0.980586
Target:  5'- -gGCCAUGCUGACCuGGGGcgUgcgCCa -3'
miRNA:   3'- gaUGGUAUGGUUGGuCUCCuaGa--GGg -5'
25034 5' -51.1 NC_005336.1 + 9091 0.67 0.980586
Target:  5'- gCUACUcgGCCAGuCCGGAGG----CCCg -3'
miRNA:   3'- -GAUGGuaUGGUU-GGUCUCCuagaGGG- -5'
25034 5' -51.1 NC_005336.1 + 74063 0.67 0.980586
Target:  5'- -gGCCGUcgagguCUAGCgCGG-GGAUCUCCUg -3'
miRNA:   3'- gaUGGUAu-----GGUUG-GUCuCCUAGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 21872 0.67 0.975786
Target:  5'- aCU-CCAUGCUggUguGAGGGUagucgaUCCCc -3'
miRNA:   3'- -GAuGGUAUGGuuGguCUCCUAg-----AGGG- -5'
25034 5' -51.1 NC_005336.1 + 79697 0.68 0.973084
Target:  5'- ---aCAgcuCCucGCCGGAGG-UCUCCCa -3'
miRNA:   3'- gaugGUau-GGu-UGGUCUCCuAGAGGG- -5'
25034 5' -51.1 NC_005336.1 + 107321 0.68 0.973084
Target:  5'- uUACCAguuuccCCAACUuugGGAGGAaCUUCCu -3'
miRNA:   3'- gAUGGUau----GGUUGG---UCUCCUaGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.