miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 3' -57.7 NC_005336.1 + 14975 0.66 0.850838
Target:  5'- cCGUGCaGCggcgaGCG-CCGAGCGCcGGg -3'
miRNA:   3'- cGCGCGaCGag---UGUaGGCUCGCGaCC- -5'
25035 3' -57.7 NC_005336.1 + 24206 0.66 0.850838
Target:  5'- aCGCGCUGUUCGCG-CCGuacGC-CUGc -3'
miRNA:   3'- cGCGCGACGAGUGUaGGCu--CGcGACc -5'
25035 3' -57.7 NC_005336.1 + 125338 0.66 0.850838
Target:  5'- cGUGUGCUGCgaGCGUCCGcacgucGCGCg-- -3'
miRNA:   3'- -CGCGCGACGagUGUAGGCu-----CGCGacc -5'
25035 3' -57.7 NC_005336.1 + 83287 0.66 0.850838
Target:  5'- uGCGaagaGCUGCgCACGggccgCUGGGCGCg-- -3'
miRNA:   3'- -CGCg---CGACGaGUGUa----GGCUCGCGacc -5'
25035 3' -57.7 NC_005336.1 + 133139 0.66 0.850838
Target:  5'- cCGCuGCUGCgCugGUUCGAGgCGCgcaaGGa -3'
miRNA:   3'- cGCG-CGACGaGugUAGGCUC-GCGa---CC- -5'
25035 3' -57.7 NC_005336.1 + 61894 0.66 0.850838
Target:  5'- uGCGCccGCUGCUCGagAUCacgcagGAGCGCUu- -3'
miRNA:   3'- -CGCG--CGACGAGUg-UAGg-----CUCGCGAcc -5'
25035 3' -57.7 NC_005336.1 + 130231 0.66 0.850838
Target:  5'- uGCGCGagauggUGCUCGCGaacgCCGcGCGC-GGc -3'
miRNA:   3'- -CGCGCg-----ACGAGUGUa---GGCuCGCGaCC- -5'
25035 3' -57.7 NC_005336.1 + 70679 0.66 0.850838
Target:  5'- cGCGCGCgcacGUUCugGaagUCCGuGCGCc-- -3'
miRNA:   3'- -CGCGCGa---CGAGugU---AGGCuCGCGacc -5'
25035 3' -57.7 NC_005336.1 + 15833 0.66 0.850838
Target:  5'- uGCGCGC-GgUCACGUCCGcGCccGC-GGc -3'
miRNA:   3'- -CGCGCGaCgAGUGUAGGCuCG--CGaCC- -5'
25035 3' -57.7 NC_005336.1 + 129522 0.66 0.850838
Target:  5'- cGUGCGCcgGCUCgGCAcgCCGcuGCGCcGGc -3'
miRNA:   3'- -CGCGCGa-CGAG-UGUa-GGCu-CGCGaCC- -5'
25035 3' -57.7 NC_005336.1 + 65740 0.66 0.850838
Target:  5'- aCGCGga-CUCGCGUCCGgAGCGCg-- -3'
miRNA:   3'- cGCGCgacGAGUGUAGGC-UCGCGacc -5'
25035 3' -57.7 NC_005336.1 + 133359 0.66 0.848481
Target:  5'- cGgGCGCUGCgcucgCgGCGUCguggaauucgugcuCGAGCGCgGGc -3'
miRNA:   3'- -CgCGCGACGa----G-UGUAG--------------GCUCGCGaCC- -5'
25035 3' -57.7 NC_005336.1 + 89056 0.66 0.846108
Target:  5'- gGUGCGCgGCacCACGUUgaagagcgagagcagCGAGCGCgGGa -3'
miRNA:   3'- -CGCGCGaCGa-GUGUAG---------------GCUCGCGaCC- -5'
25035 3' -57.7 NC_005336.1 + 133673 0.66 0.842917
Target:  5'- cCGCGCUGCUgugcgUGCAggagCUG-GCGCUGc -3'
miRNA:   3'- cGCGCGACGA-----GUGUa---GGCuCGCGACc -5'
25035 3' -57.7 NC_005336.1 + 132739 0.66 0.842917
Target:  5'- cGCGUGCUGCUgGaggCUG-GCGC-GGa -3'
miRNA:   3'- -CGCGCGACGAgUguaGGCuCGCGaCC- -5'
25035 3' -57.7 NC_005336.1 + 57771 0.66 0.842917
Target:  5'- cGCGCGCccGUgaUCACGaaCGGcGUGCUGGu -3'
miRNA:   3'- -CGCGCGa-CG--AGUGUagGCU-CGCGACC- -5'
25035 3' -57.7 NC_005336.1 + 41288 0.66 0.842917
Target:  5'- uGCGCGCUGg-UAgGUCCG-GCG-UGGu -3'
miRNA:   3'- -CGCGCGACgaGUgUAGGCuCGCgACC- -5'
25035 3' -57.7 NC_005336.1 + 47128 0.66 0.842917
Target:  5'- aGCGCG-UGgUCAUGUUCGAgucGCGCgUGGu -3'
miRNA:   3'- -CGCGCgACgAGUGUAGGCU---CGCG-ACC- -5'
25035 3' -57.7 NC_005336.1 + 58507 0.66 0.842114
Target:  5'- cGCGCGC-GCUCGCGggcuuccuccaguUCUGuAGaacccgcaCGCUGGa -3'
miRNA:   3'- -CGCGCGaCGAGUGU-------------AGGC-UC--------GCGACC- -5'
25035 3' -57.7 NC_005336.1 + 112912 0.66 0.840504
Target:  5'- gGUGaCGCUGCUgCGCGUggccaagcgccugcUCGAGaugcCGCUGGa -3'
miRNA:   3'- -CGC-GCGACGA-GUGUA--------------GGCUC----GCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.