miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25037 3' -54 NC_005336.1 + 47671 0.66 0.964549
Target:  5'- gAGUGcg-CCGCCGgcagCGUCGACgCGGa -3'
miRNA:   3'- -UCACaaaGGCGGCag--GUAGCUG-GUCc -5'
25037 3' -54 NC_005336.1 + 138767 0.66 0.957472
Target:  5'- --cGgg-CCGCCG-CCcgCGACCGcGGg -3'
miRNA:   3'- ucaCaaaGGCGGCaGGuaGCUGGU-CC- -5'
25037 3' -54 NC_005336.1 + 138767 0.66 0.957472
Target:  5'- --cGgg-CCGCCG-CCcgCGACCGcGGg -3'
miRNA:   3'- ucaCaaaGGCGGCaGGuaGCUGGU-CC- -5'
25037 3' -54 NC_005336.1 + 29918 0.66 0.953595
Target:  5'- gGGaUGU---UGCUG-CCGUCGGCCAGGc -3'
miRNA:   3'- -UC-ACAaagGCGGCaGGUAGCUGGUCC- -5'
25037 3' -54 NC_005336.1 + 51196 0.66 0.949486
Target:  5'- --gGUcUCCGCCGUCUA-CGGCUucaccgAGGa -3'
miRNA:   3'- ucaCAaAGGCGGCAGGUaGCUGG------UCC- -5'
25037 3' -54 NC_005336.1 + 98436 0.66 0.949486
Target:  5'- --cGgggUCGCCGUCC-UCGACCAc- -3'
miRNA:   3'- ucaCaaaGGCGGCAGGuAGCUGGUcc -5'
25037 3' -54 NC_005336.1 + 17832 0.67 0.945142
Target:  5'- uGGcUGgggaUGCCGUCgGccUCGGCCAGGg -3'
miRNA:   3'- -UC-ACaaagGCGGCAGgU--AGCUGGUCC- -5'
25037 3' -54 NC_005336.1 + 50626 0.67 0.945142
Target:  5'- -----aUCUGCuuuCGUUgGUCGACCAGGa -3'
miRNA:   3'- ucacaaAGGCG---GCAGgUAGCUGGUCC- -5'
25037 3' -54 NC_005336.1 + 4333 0.67 0.940561
Target:  5'- -uUGUUUCCGUUugcagCCGUCaGCCAGGc -3'
miRNA:   3'- ucACAAAGGCGGca---GGUAGcUGGUCC- -5'
25037 3' -54 NC_005336.1 + 47046 0.67 0.930676
Target:  5'- uGGUGcggcgCgCGCCGUCCccGUgGAUCGGGa -3'
miRNA:   3'- -UCACaaa--G-GCGGCAGG--UAgCUGGUCC- -5'
25037 3' -54 NC_005336.1 + 50273 0.67 0.930676
Target:  5'- cGGgcag-CCGCCG-CCGUCGGCCGc- -3'
miRNA:   3'- -UCacaaaGGCGGCaGGUAGCUGGUcc -5'
25037 3' -54 NC_005336.1 + 26943 0.67 0.930676
Target:  5'- aGGUGg--CCGCagaGaucUCCGUCG-CCGGGa -3'
miRNA:   3'- -UCACaaaGGCGg--C---AGGUAGCuGGUCC- -5'
25037 3' -54 NC_005336.1 + 3232 0.67 0.919822
Target:  5'- gAGuUGUagCCGCCGaCCAccgCGACgCAGGu -3'
miRNA:   3'- -UC-ACAaaGGCGGCaGGUa--GCUG-GUCC- -5'
25037 3' -54 NC_005336.1 + 3232 0.67 0.919822
Target:  5'- gAGuUGUagCCGCCGaCCAccgCGACgCAGGu -3'
miRNA:   3'- -UC-ACAaaGGCGGCaGGUa--GCUG-GUCC- -5'
25037 3' -54 NC_005336.1 + 40482 0.68 0.895225
Target:  5'- aGGUGUggaagagCCGCgCGUCCG-CGugCAuGGa -3'
miRNA:   3'- -UCACAaa-----GGCG-GCAGGUaGCugGU-CC- -5'
25037 3' -54 NC_005336.1 + 98486 0.68 0.888486
Target:  5'- -uUGUUUCCGgCGgcgaCAUCGACCAc- -3'
miRNA:   3'- ucACAAAGGCgGCag--GUAGCUGGUcc -5'
25037 3' -54 NC_005336.1 + 103707 0.69 0.874325
Target:  5'- cGUGauggCCGUgUGUCCcuUCGACCAGGa -3'
miRNA:   3'- uCACaaa-GGCG-GCAGGu-AGCUGGUCC- -5'
25037 3' -54 NC_005336.1 + 41469 0.69 0.859286
Target:  5'- ------aCCGCCG-CCGUCGAagaaCCAGGa -3'
miRNA:   3'- ucacaaaGGCGGCaGGUAGCU----GGUCC- -5'
25037 3' -54 NC_005336.1 + 26947 0.7 0.835183
Target:  5'- -----gUCCGCCGggUCCAggcaGACCGGGa -3'
miRNA:   3'- ucacaaAGGCGGC--AGGUag--CUGGUCC- -5'
25037 3' -54 NC_005336.1 + 124975 0.7 0.818166
Target:  5'- cGUGc-UCUGCCG-CCAgauggCGGCCGGGu -3'
miRNA:   3'- uCACaaAGGCGGCaGGUa----GCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.