miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25038 3' -62 NC_005336.1 + 44868 0.66 0.629656
Target:  5'- ----cGGUCCCgGCGGagGCCGUGa- -3'
miRNA:   3'- guguaCCGGGGgUGCCagCGGCGCau -5'
25038 3' -62 NC_005336.1 + 44907 0.66 0.599873
Target:  5'- aCGCAUaGCgCCUUACGG-CGCgCGCGUGg -3'
miRNA:   3'- -GUGUAcCG-GGGGUGCCaGCG-GCGCAU- -5'
25038 3' -62 NC_005336.1 + 49731 0.71 0.349375
Target:  5'- gGCA-GGCUCgCGCGGUacaGCCGCGUc -3'
miRNA:   3'- gUGUaCCGGGgGUGCCAg--CGGCGCAu -5'
25038 3' -62 NC_005336.1 + 50694 0.66 0.629656
Target:  5'- cCGCucGGCCUCCGCgcgcgcggcaaGGUCGCCGaCGa- -3'
miRNA:   3'- -GUGuaCCGGGGGUG-----------CCAGCGGC-GCau -5'
25038 3' -62 NC_005336.1 + 52724 0.69 0.413479
Target:  5'- uGCAUGGaCCCCgACGGgCGCUacaacaGCGUGg -3'
miRNA:   3'- gUGUACC-GGGGgUGCCaGCGG------CGCAU- -5'
25038 3' -62 NC_005336.1 + 55079 0.67 0.550767
Target:  5'- gCACGuUGGUgUCCGCGG-CaGCCGCGUc -3'
miRNA:   3'- -GUGU-ACCGgGGGUGCCaG-CGGCGCAu -5'
25038 3' -62 NC_005336.1 + 55629 0.75 0.201257
Target:  5'- cCGCGU-GCUCCaCGcCGGUCGCCGCGUGc -3'
miRNA:   3'- -GUGUAcCGGGG-GU-GCCAGCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 58685 0.68 0.512385
Target:  5'- gGCAUGGCCagCgGCGGcccCGCgCGCGUGc -3'
miRNA:   3'- gUGUACCGGg-GgUGCCa--GCG-GCGCAU- -5'
25038 3' -62 NC_005336.1 + 60139 0.68 0.502958
Target:  5'- gCACGUGGUcgCCCUugGGgugCGgCGCGg- -3'
miRNA:   3'- -GUGUACCG--GGGGugCCa--GCgGCGCau -5'
25038 3' -62 NC_005336.1 + 60922 0.68 0.512385
Target:  5'- gCGCAUGgaccgcGCCCCCACG--CGCUGCGa- -3'
miRNA:   3'- -GUGUAC------CGGGGGUGCcaGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 63831 0.67 0.556604
Target:  5'- cCGCGcGGCCgCCAUGGagcgcaaguccggCGCCGCGg- -3'
miRNA:   3'- -GUGUaCCGGgGGUGCCa------------GCGGCGCau -5'
25038 3' -62 NC_005336.1 + 64061 0.67 0.570292
Target:  5'- cCGCAUGaCCUCCGCGGacgucUCGCUGCu-- -3'
miRNA:   3'- -GUGUACcGGGGGUGCC-----AGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 64634 0.68 0.502958
Target:  5'- gCGCGaGGCCUUCACGGacuucgCGCCGCu-- -3'
miRNA:   3'- -GUGUaCCGGGGGUGCCa-----GCGGCGcau -5'
25038 3' -62 NC_005336.1 + 64688 0.66 0.629656
Target:  5'- gCugGUGGCgcgCCCgGCGGaCGCgCGCGg- -3'
miRNA:   3'- -GugUACCG---GGGgUGCCaGCG-GCGCau -5'
25038 3' -62 NC_005336.1 + 66094 0.72 0.292672
Target:  5'- gCGCAUGaccGCCUCCGCGacGUUGCCGCGg- -3'
miRNA:   3'- -GUGUAC---CGGGGGUGC--CAGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 69121 0.74 0.216271
Target:  5'- gCGCAUGGCCUCCGa-GUcCGCCGCGg- -3'
miRNA:   3'- -GUGUACCGGGGGUgcCA-GCGGCGCau -5'
25038 3' -62 NC_005336.1 + 69194 0.7 0.36472
Target:  5'- aCGCA-GGCCUUCgcGCGGUCGCCG-GUGa -3'
miRNA:   3'- -GUGUaCCGGGGG--UGCCAGCGGCgCAU- -5'
25038 3' -62 NC_005336.1 + 71516 0.68 0.466053
Target:  5'- aACGUGGCCaugCCCGCGGaCGCCuuccggcaGCGg- -3'
miRNA:   3'- gUGUACCGG---GGGUGCCaGCGG--------CGCau -5'
25038 3' -62 NC_005336.1 + 71647 0.68 0.502958
Target:  5'- cCACGgaGGCCCaggcguUCGCGG-CGCCGCGg- -3'
miRNA:   3'- -GUGUa-CCGGG------GGUGCCaGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 75410 0.68 0.466053
Target:  5'- gGCGUGuGCCCCacugucucgGCGGUCuGCCGCa-- -3'
miRNA:   3'- gUGUAC-CGGGGg--------UGCCAG-CGGCGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.