miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25038 3' -62 NC_005336.1 + 1022 0.66 0.609787
Target:  5'- cCGCuccGCuCCCCGCGGUCGCgGgCGg- -3'
miRNA:   3'- -GUGuacCG-GGGGUGCCAGCGgC-GCau -5'
25038 3' -62 NC_005336.1 + 1022 0.66 0.609787
Target:  5'- cCGCuccGCuCCCCGCGGUCGCgGgCGg- -3'
miRNA:   3'- -GUGuacCG-GGGGUGCCAGCGgC-GCau -5'
25038 3' -62 NC_005336.1 + 3932 0.7 0.388598
Target:  5'- aGCG-GGCCgCCGCGGcgcagCGCCGCGc- -3'
miRNA:   3'- gUGUaCCGGgGGUGCCa----GCGGCGCau -5'
25038 3' -62 NC_005336.1 + 5431 0.66 0.580119
Target:  5'- gCACGUGGCgCgucagCGCGGUCGCCacGCGc- -3'
miRNA:   3'- -GUGUACCGgGg----GUGCCAGCGG--CGCau -5'
25038 3' -62 NC_005336.1 + 7221 0.69 0.413479
Target:  5'- gACAguccGGCCaCUCGCGGUCGCacgGCGUc -3'
miRNA:   3'- gUGUa---CCGG-GGGUGCCAGCGg--CGCAu -5'
25038 3' -62 NC_005336.1 + 8706 0.67 0.531451
Target:  5'- aGCAUGGCCUCCAgcaccgacaGGUCGaccucggaCGCGUu -3'
miRNA:   3'- gUGUACCGGGGGUg--------CCAGCg-------GCGCAu -5'
25038 3' -62 NC_005336.1 + 13061 0.69 0.457046
Target:  5'- cCACGacGGCCCCaacgccgagagCGCGGUgcaggcggCGCCGCGUGc -3'
miRNA:   3'- -GUGUa-CCGGGG-----------GUGCCA--------GCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 15728 0.66 0.580119
Target:  5'- aCGCGgcgacGGCgUCCGCGGgagGCCGCGUc -3'
miRNA:   3'- -GUGUa----CCGgGGGUGCCag-CGGCGCAu -5'
25038 3' -62 NC_005336.1 + 22308 0.66 0.629656
Target:  5'- -cCGUGGaCCCCgAC-GUCGCCGCc-- -3'
miRNA:   3'- guGUACC-GGGGgUGcCAGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 22675 0.67 0.574219
Target:  5'- gCGCGcGGUcgugagcaacuucaaCCCCGCGGUgGUCGCGg- -3'
miRNA:   3'- -GUGUaCCG---------------GGGGUGCCAgCGGCGCau -5'
25038 3' -62 NC_005336.1 + 24862 0.78 0.119623
Target:  5'- --gAUGGCCUCCGCGuUCGCCGCGUu -3'
miRNA:   3'- gugUACCGGGGGUGCcAGCGGCGCAu -5'
25038 3' -62 NC_005336.1 + 25684 0.68 0.484338
Target:  5'- ----cGGUCCaCCGCGGUCuCCGCGg- -3'
miRNA:   3'- guguaCCGGG-GGUGCCAGcGGCGCau -5'
25038 3' -62 NC_005336.1 + 26481 0.69 0.425421
Target:  5'- aACAcGGCCgcguuCCCgucggcgucggugcuGCGGUCGCCGCGa- -3'
miRNA:   3'- gUGUaCCGG-----GGG---------------UGCCAGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 30185 0.77 0.135701
Target:  5'- gACGUGGCCgCgCaCGCGGUCGCCGUGg- -3'
miRNA:   3'- gUGUACCGG-G-G-GUGCCAGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 30488 0.78 0.116628
Target:  5'- uGCGUGGCCCUCGCGGcggCGgCCGCGa- -3'
miRNA:   3'- gUGUACCGGGGGUGCCa--GC-GGCGCau -5'
25038 3' -62 NC_005336.1 + 35902 0.7 0.36472
Target:  5'- gGCGccGCCgCCGCGGU-GCCGCGUGa -3'
miRNA:   3'- gUGUacCGGgGGUGCCAgCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 36290 0.66 0.629656
Target:  5'- cCGCGUGcGCgCCCgGCGG-CGgCGCGg- -3'
miRNA:   3'- -GUGUAC-CG-GGGgUGCCaGCgGCGCau -5'
25038 3' -62 NC_005336.1 + 38680 0.69 0.457046
Target:  5'- ----cGGCUCCC-CGGucUCGCCGCGg- -3'
miRNA:   3'- guguaCCGGGGGuGCC--AGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 41110 0.68 0.502958
Target:  5'- gGCGUGGCCaucaUCACGGccUUGCCGCc-- -3'
miRNA:   3'- gUGUACCGGg---GGUGCC--AGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 44854 0.7 0.405076
Target:  5'- cCGCcgGcGCgCCCGCGGgCGuCCGCGUGc -3'
miRNA:   3'- -GUGuaC-CGgGGGUGCCaGC-GGCGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.