miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25038 3' -62 NC_005336.1 + 131482 1.05 0.001254
Target:  5'- cCACAUGGCCCCCACGGUCGCCGCGUAc -3'
miRNA:   3'- -GUGUACCGGGGGUGCCAGCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 30488 0.78 0.116628
Target:  5'- uGCGUGGCCCUCGCGGcggCGgCCGCGa- -3'
miRNA:   3'- gUGUACCGGGGGUGCCa--GC-GGCGCau -5'
25038 3' -62 NC_005336.1 + 24862 0.78 0.119623
Target:  5'- --gAUGGCCUCCGCGuUCGCCGCGUu -3'
miRNA:   3'- gugUACCGGGGGUGCcAGCGGCGCAu -5'
25038 3' -62 NC_005336.1 + 30185 0.77 0.135701
Target:  5'- gACGUGGCCgCgCaCGCGGUCGCCGUGg- -3'
miRNA:   3'- gUGUACCGG-G-G-GUGCCAGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 124065 0.75 0.173936
Target:  5'- gACGcGGCCuCCCGCGGacgccgUCGCCGCGUc -3'
miRNA:   3'- gUGUaCCGG-GGGUGCC------AGCGGCGCAu -5'
25038 3' -62 NC_005336.1 + 55629 0.75 0.201257
Target:  5'- cCGCGU-GCUCCaCGcCGGUCGCCGCGUGc -3'
miRNA:   3'- -GUGUAcCGGGG-GU-GCCAGCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 69121 0.74 0.216271
Target:  5'- gCGCAUGGCCUCCGa-GUcCGCCGCGg- -3'
miRNA:   3'- -GUGUACCGGGGGUgcCA-GCGGCGCau -5'
25038 3' -62 NC_005336.1 + 107699 0.72 0.279669
Target:  5'- gCACGUGGCCUgC-CGGUCGCUGUa-- -3'
miRNA:   3'- -GUGUACCGGGgGuGCCAGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 66094 0.72 0.292672
Target:  5'- gCGCAUGaccGCCUCCGCGacGUUGCCGCGg- -3'
miRNA:   3'- -GUGUAC---CGGGGGUGC--CAGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 83914 0.71 0.313055
Target:  5'- gCGCAUGGCCaCCACgaGGUCGCUGuCGa- -3'
miRNA:   3'- -GUGUACCGGgGGUG--CCAGCGGC-GCau -5'
25038 3' -62 NC_005336.1 + 133344 0.71 0.32723
Target:  5'- cUACAUGGCgaCCUACGGgCGCUGCGc- -3'
miRNA:   3'- -GUGUACCGg-GGGUGCCaGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 134103 0.71 0.334495
Target:  5'- uCGCGcUGGCCUCCGCGG-CGCuCGCa-- -3'
miRNA:   3'- -GUGU-ACCGGGGGUGCCaGCG-GCGcau -5'
25038 3' -62 NC_005336.1 + 49731 0.71 0.349375
Target:  5'- gGCA-GGCUCgCGCGGUacaGCCGCGUc -3'
miRNA:   3'- gUGUaCCGGGgGUGCCAg--CGGCGCAu -5'
25038 3' -62 NC_005336.1 + 69194 0.7 0.36472
Target:  5'- aCGCA-GGCCUUCgcGCGGUCGCCG-GUGa -3'
miRNA:   3'- -GUGUaCCGGGGG--UGCCAGCGGCgCAU- -5'
25038 3' -62 NC_005336.1 + 131912 0.7 0.36472
Target:  5'- aCGCcgGGCCCagcgaggccUCGCGGcUCGCCGUGg- -3'
miRNA:   3'- -GUGuaCCGGG---------GGUGCC-AGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 35902 0.7 0.36472
Target:  5'- gGCGccGCCgCCGCGGU-GCCGCGUGa -3'
miRNA:   3'- gUGUacCGGgGGUGCCAgCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 118085 0.7 0.372566
Target:  5'- aACA-GGUCCUgGCGGUCGuuguCCGCGUAc -3'
miRNA:   3'- gUGUaCCGGGGgUGCCAGC----GGCGCAU- -5'
25038 3' -62 NC_005336.1 + 127036 0.7 0.372566
Target:  5'- aCGCG-GGCCCgCGCGGguacgCGCCGCu-- -3'
miRNA:   3'- -GUGUaCCGGGgGUGCCa----GCGGCGcau -5'
25038 3' -62 NC_005336.1 + 125852 0.7 0.372566
Target:  5'- cUACGUGGCCgugcucaagaCCCACGGUCuGCaCGCa-- -3'
miRNA:   3'- -GUGUACCGG----------GGGUGCCAG-CG-GCGcau -5'
25038 3' -62 NC_005336.1 + 100394 0.7 0.380525
Target:  5'- cCACGcGGCCCaCGCGGcccuugCGCUGCGUGu -3'
miRNA:   3'- -GUGUaCCGGGgGUGCCa-----GCGGCGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.