miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25038 3' -62 NC_005336.1 + 97148 0.67 0.554656
Target:  5'- ----cGGCCCgcgaccagcugcuggCCGCGGgccgCGCCGUGUAc -3'
miRNA:   3'- guguaCCGGG---------------GGUGCCa---GCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 71516 0.68 0.466053
Target:  5'- aACGUGGCCaugCCCGCGGaCGCCuuccggcaGCGg- -3'
miRNA:   3'- gUGUACCGG---GGGUGCCaGCGG--------CGCau -5'
25038 3' -62 NC_005336.1 + 25684 0.68 0.484338
Target:  5'- ----cGGUCCaCCGCGGUCuCCGCGg- -3'
miRNA:   3'- guguaCCGGG-GGUGCCAGcGGCGCau -5'
25038 3' -62 NC_005336.1 + 60139 0.68 0.502958
Target:  5'- gCACGUGGUcgCCCUugGGgugCGgCGCGg- -3'
miRNA:   3'- -GUGUACCG--GGGGugCCa--GCgGCGCau -5'
25038 3' -62 NC_005336.1 + 41110 0.68 0.502958
Target:  5'- gGCGUGGCCaucaUCACGGccUUGCCGCc-- -3'
miRNA:   3'- gUGUACCGGg---GGUGCC--AGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 58685 0.68 0.512385
Target:  5'- gGCAUGGCCagCgGCGGcccCGCgCGCGUGc -3'
miRNA:   3'- gUGUACCGGg-GgUGCCa--GCG-GCGCAU- -5'
25038 3' -62 NC_005336.1 + 60922 0.68 0.512385
Target:  5'- gCGCAUGgaccgcGCCCCCACG--CGCUGCGa- -3'
miRNA:   3'- -GUGUAC------CGGGGGUGCcaGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 78305 0.67 0.531451
Target:  5'- uCACGcUGaGCCCCuCGCGGaUGCUGCGa- -3'
miRNA:   3'- -GUGU-AC-CGGGG-GUGCCaGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 125922 0.67 0.550767
Target:  5'- -----aGCgCCCGCGGacgCGCCGCGUGc -3'
miRNA:   3'- guguacCGgGGGUGCCa--GCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 125048 0.68 0.466053
Target:  5'- cCACAUcGGUaccgcaaCUCGCGGUCGCCgGUGUGg -3'
miRNA:   3'- -GUGUA-CCGg------GGGUGCCAGCGG-CGCAU- -5'
25038 3' -62 NC_005336.1 + 38680 0.69 0.457046
Target:  5'- ----cGGCUCCC-CGGucUCGCCGCGg- -3'
miRNA:   3'- guguaCCGGGGGuGCC--AGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 26481 0.69 0.425421
Target:  5'- aACAcGGCCgcguuCCCgucggcgucggugcuGCGGUCGCCGCGa- -3'
miRNA:   3'- gUGUaCCGG-----GGG---------------UGCCAGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 124065 0.75 0.173936
Target:  5'- gACGcGGCCuCCCGCGGacgccgUCGCCGCGUc -3'
miRNA:   3'- gUGUaCCGG-GGGUGCC------AGCGGCGCAu -5'
25038 3' -62 NC_005336.1 + 134103 0.71 0.334495
Target:  5'- uCGCGcUGGCCUCCGCGG-CGCuCGCa-- -3'
miRNA:   3'- -GUGU-ACCGGGGGUGCCaGCG-GCGcau -5'
25038 3' -62 NC_005336.1 + 49731 0.71 0.349375
Target:  5'- gGCA-GGCUCgCGCGGUacaGCCGCGUc -3'
miRNA:   3'- gUGUaCCGGGgGUGCCAg--CGGCGCAu -5'
25038 3' -62 NC_005336.1 + 35902 0.7 0.36472
Target:  5'- gGCGccGCCgCCGCGGU-GCCGCGUGa -3'
miRNA:   3'- gUGUacCGGgGGUGCCAgCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 131912 0.7 0.36472
Target:  5'- aCGCcgGGCCCagcgaggccUCGCGGcUCGCCGUGg- -3'
miRNA:   3'- -GUGuaCCGGG---------GGUGCC-AGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 127036 0.7 0.372566
Target:  5'- aCGCG-GGCCCgCGCGGguacgCGCCGCu-- -3'
miRNA:   3'- -GUGUaCCGGGgGUGCCa----GCGGCGcau -5'
25038 3' -62 NC_005336.1 + 3932 0.7 0.388598
Target:  5'- aGCG-GGCCgCCGCGGcgcagCGCCGCGc- -3'
miRNA:   3'- gUGUaCCGGgGGUGCCa----GCGGCGCau -5'
25038 3' -62 NC_005336.1 + 100868 0.69 0.413479
Target:  5'- cCACGcGGCCUUCGCGGcgCGCgCGCGg- -3'
miRNA:   3'- -GUGUaCCGGGGGUGCCa-GCG-GCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.