Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25038 | 3' | -62 | NC_005336.1 | + | 49731 | 0.71 | 0.349375 |
Target: 5'- gGCA-GGCUCgCGCGGUacaGCCGCGUc -3' miRNA: 3'- gUGUaCCGGGgGUGCCAg--CGGCGCAu -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 35902 | 0.7 | 0.36472 |
Target: 5'- gGCGccGCCgCCGCGGU-GCCGCGUGa -3' miRNA: 3'- gUGUacCGGgGGUGCCAgCGGCGCAU- -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 131912 | 0.7 | 0.36472 |
Target: 5'- aCGCcgGGCCCagcgaggccUCGCGGcUCGCCGUGg- -3' miRNA: 3'- -GUGuaCCGGG---------GGUGCC-AGCGGCGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 127036 | 0.7 | 0.372566 |
Target: 5'- aCGCG-GGCCCgCGCGGguacgCGCCGCu-- -3' miRNA: 3'- -GUGUaCCGGGgGUGCCa----GCGGCGcau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 3932 | 0.7 | 0.388598 |
Target: 5'- aGCG-GGCCgCCGCGGcgcagCGCCGCGc- -3' miRNA: 3'- gUGUaCCGGgGGUGCCa----GCGGCGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 25684 | 0.68 | 0.484338 |
Target: 5'- ----cGGUCCaCCGCGGUCuCCGCGg- -3' miRNA: 3'- guguaCCGGG-GGUGCCAGcGGCGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 71516 | 0.68 | 0.466053 |
Target: 5'- aACGUGGCCaugCCCGCGGaCGCCuuccggcaGCGg- -3' miRNA: 3'- gUGUACCGG---GGGUGCCaGCGG--------CGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 125048 | 0.68 | 0.466053 |
Target: 5'- cCACAUcGGUaccgcaaCUCGCGGUCGCCgGUGUGg -3' miRNA: 3'- -GUGUA-CCGg------GGGUGCCAGCGG-CGCAU- -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 38680 | 0.69 | 0.457046 |
Target: 5'- ----cGGCUCCC-CGGucUCGCCGCGg- -3' miRNA: 3'- guguaCCGGGGGuGCC--AGCGGCGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 26481 | 0.69 | 0.425421 |
Target: 5'- aACAcGGCCgcguuCCCgucggcgucggugcuGCGGUCGCCGCGa- -3' miRNA: 3'- gUGUaCCGG-----GGG---------------UGCCAGCGGCGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 100868 | 0.69 | 0.413479 |
Target: 5'- cCACGcGGCCUUCGCGGcgCGCgCGCGg- -3' miRNA: 3'- -GUGUaCCGGGGGUGCCa-GCG-GCGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 87881 | 0.67 | 0.567352 |
Target: 5'- --aGUGGUgCCCCGCGGcggcgagcuucuccUUGCCGCGg- -3' miRNA: 3'- gugUACCG-GGGGUGCC--------------AGCGGCGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 64061 | 0.67 | 0.570292 |
Target: 5'- cCGCAUGaCCUCCGCGGacgucUCGCUGCu-- -3' miRNA: 3'- -GUGUACcGGGGGUGCC-----AGCGGCGcau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 5431 | 0.66 | 0.580119 |
Target: 5'- gCACGUGGCgCgucagCGCGGUCGCCacGCGc- -3' miRNA: 3'- -GUGUACCGgGg----GUGCCAGCGG--CGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 15728 | 0.66 | 0.580119 |
Target: 5'- aCGCGgcgacGGCgUCCGCGGgagGCCGCGUc -3' miRNA: 3'- -GUGUa----CCGgGGGUGCCag-CGGCGCAu -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 114364 | 0.66 | 0.589982 |
Target: 5'- gACGaGGCCUUCGcCGGccgCGCCGCGg- -3' miRNA: 3'- gUGUaCCGGGGGU-GCCa--GCGGCGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 75773 | 0.66 | 0.609787 |
Target: 5'- aGCGUGaGCaugCCCACGGU-GCCGCu-- -3' miRNA: 3'- gUGUAC-CGg--GGGUGCCAgCGGCGcau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 1022 | 0.66 | 0.609787 |
Target: 5'- cCGCuccGCuCCCCGCGGUCGCgGgCGg- -3' miRNA: 3'- -GUGuacCG-GGGGUGCCAGCGgC-GCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 64688 | 0.66 | 0.629656 |
Target: 5'- gCugGUGGCgcgCCCgGCGGaCGCgCGCGg- -3' miRNA: 3'- -GugUACCG---GGGgUGCCaGCG-GCGCau -5' |
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25038 | 3' | -62 | NC_005336.1 | + | 131482 | 1.05 | 0.001254 |
Target: 5'- cCACAUGGCCCCCACGGUCGCCGCGUAc -3' miRNA: 3'- -GUGUACCGGGGGUGCCAGCGGCGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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