miRNA display CGI


Results 41 - 60 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 3' -56.5 NC_005336.1 + 91593 0.66 0.865637
Target:  5'- cGAgCGuuuCCACGCGCG-GCUCGAaggCg -3'
miRNA:   3'- aCUgGC---GGUGCGCGCuCGAGUUguaG- -5'
25039 3' -56.5 NC_005336.1 + 69041 0.66 0.865637
Target:  5'- aUGGCgCGCUcguacaGCGCGCGGuuCUCGGCGUUc -3'
miRNA:   3'- -ACUG-GCGG------UGCGCGCUc-GAGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 112345 0.66 0.865637
Target:  5'- -aGCCGCUggcguggacGCGCGCGcucgGGCccauguccguggUCAGCAUCg -3'
miRNA:   3'- acUGGCGG---------UGCGCGC----UCG------------AGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 124362 0.66 0.865637
Target:  5'- aUGA-CGCCGUGCGUGAGCgugcgCAugacaggccGCAUCg -3'
miRNA:   3'- -ACUgGCGGUGCGCGCUCGa----GU---------UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 49824 0.66 0.865637
Target:  5'- -cGCCGUCaaGCGCGCGAccuGCU--GCAUCu -3'
miRNA:   3'- acUGGCGG--UGCGCGCU---CGAguUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 73538 0.66 0.865637
Target:  5'- cGACC-CCuuCGCGUGGGCgaUCAACuUCc -3'
miRNA:   3'- aCUGGcGGu-GCGCGCUCG--AGUUGuAG- -5'
25039 3' -56.5 NC_005336.1 + 55471 0.66 0.865637
Target:  5'- cGACCG-CACGCGCcucgcccGGCUaCAcCAUCa -3'
miRNA:   3'- aCUGGCgGUGCGCGc------UCGA-GUuGUAG- -5'
25039 3' -56.5 NC_005336.1 + 74391 0.66 0.865637
Target:  5'- -cACCaCCAC-CGaCGGGCUCGugGUCg -3'
miRNA:   3'- acUGGcGGUGcGC-GCUCGAGUugUAG- -5'
25039 3' -56.5 NC_005336.1 + 104385 0.66 0.865637
Target:  5'- cUGACCGU---GCGCGAGCgccgCGcCAUCc -3'
miRNA:   3'- -ACUGGCGgugCGCGCUCGa---GUuGUAG- -5'
25039 3' -56.5 NC_005336.1 + 122700 0.66 0.862595
Target:  5'- gGGCCGUCcucgagacggacgcGCGCggacacuGCGAGCcCGGCGUCc -3'
miRNA:   3'- aCUGGCGG--------------UGCG-------CGCUCGaGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 30812 0.66 0.857969
Target:  5'- aGugCGCgAcCGCGCGGGCgcgcacCAGCGg- -3'
miRNA:   3'- aCugGCGgU-GCGCGCUCGa-----GUUGUag -5'
25039 3' -56.5 NC_005336.1 + 92692 0.66 0.857969
Target:  5'- aGGCCGUCGuggaGCGgGAGCcgguUCAgACGUCg -3'
miRNA:   3'- aCUGGCGGUg---CGCgCUCG----AGU-UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 71420 0.66 0.857969
Target:  5'- -cACUGCCGCGUGgcCGAGCUgGugGUg -3'
miRNA:   3'- acUGGCGGUGCGC--GCUCGAgUugUAg -5'
25039 3' -56.5 NC_005336.1 + 77381 0.66 0.857969
Target:  5'- cGAgCGCCGCGCGgGcGGCggggaugugCAGCcgCg -3'
miRNA:   3'- aCUgGCGGUGCGCgC-UCGa--------GUUGuaG- -5'
25039 3' -56.5 NC_005336.1 + 94193 0.66 0.857969
Target:  5'- cGGCCGCCGacuucggcaGCGUGguGGCUCGgACAg- -3'
miRNA:   3'- aCUGGCGGUg--------CGCGC--UCGAGU-UGUag -5'
25039 3' -56.5 NC_005336.1 + 123543 0.66 0.857969
Target:  5'- -uGCUGCUGCGCGCGGGCgcgGACc-- -3'
miRNA:   3'- acUGGCGGUGCGCGCUCGag-UUGuag -5'
25039 3' -56.5 NC_005336.1 + 124712 0.66 0.857969
Target:  5'- cGACCGCUGCGCgaacGCGcacguggacAGCcgCAACAUg -3'
miRNA:   3'- aCUGGCGGUGCG----CGC---------UCGa-GUUGUAg -5'
25039 3' -56.5 NC_005336.1 + 50403 0.66 0.857969
Target:  5'- cGcCCGCCGgcUGCGCG-GCgggCGACGUg -3'
miRNA:   3'- aCuGGCGGU--GCGCGCuCGa--GUUGUAg -5'
25039 3' -56.5 NC_005336.1 + 119441 0.66 0.857969
Target:  5'- -aGCUGCCGgccaagcagauCGCGaagGAGCUCGGCAUa -3'
miRNA:   3'- acUGGCGGU-----------GCGCg--CUCGAGUUGUAg -5'
25039 3' -56.5 NC_005336.1 + 6733 0.66 0.857969
Target:  5'- ---gCGCCGCGCuCGAGCagCAGCcgCa -3'
miRNA:   3'- acugGCGGUGCGcGCUCGa-GUUGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.