miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 5' -53.3 NC_005336.1 + 12551 0.67 0.938431
Target:  5'- aUCAGCgcgUUGAUGUUGCGCucgagGUCGCuGAcGCg -3'
miRNA:   3'- -GGUUG---GACUACAGCGCG-----UAGCG-CU-CG- -5'
25039 5' -53.3 NC_005336.1 + 12670 0.67 0.943149
Target:  5'- --cGCCggggGGUGUCGCGCGaCaaGGGCu -3'
miRNA:   3'- gguUGGa---CUACAGCGCGUaGcgCUCG- -5'
25039 5' -53.3 NC_005336.1 + 14368 0.66 0.959632
Target:  5'- gCAGCCccgcggcGcgGUCGCgggGCAguggcggCGCGAGCa -3'
miRNA:   3'- gGUUGGa------CuaCAGCG---CGUa------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 14908 0.72 0.7575
Target:  5'- cCCAgACCgUGAacacgUGUCGCGCAgggCGCcGGCg -3'
miRNA:   3'- -GGU-UGG-ACU-----ACAGCGCGUa--GCGcUCG- -5'
25039 5' -53.3 NC_005336.1 + 14999 0.73 0.717937
Target:  5'- cCgGGCCUcGGgcUCGCGCGgcgCGCGGGCg -3'
miRNA:   3'- -GgUUGGA-CUacAGCGCGUa--GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 15359 0.69 0.870507
Target:  5'- aCCAcguGCCgGAcGUCGUGCGagcgCGCGAGa -3'
miRNA:   3'- -GGU---UGGaCUaCAGCGCGUa---GCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 15681 0.67 0.938431
Target:  5'- gUCAGCCgcggcGGUGUCacgcaCGCGUUGCG-GCg -3'
miRNA:   3'- -GGUUGGa----CUACAGc----GCGUAGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 17181 0.67 0.955863
Target:  5'- uCCGaguGCUUG-UGUCGCGCcAUCgGCGcGGCc -3'
miRNA:   3'- -GGU---UGGACuACAGCGCG-UAG-CGC-UCG- -5'
25039 5' -53.3 NC_005336.1 + 17966 0.67 0.938431
Target:  5'- cCCGACC-GcgGUCuCGCAgcccagCGCGaAGCg -3'
miRNA:   3'- -GGUUGGaCuaCAGcGCGUa-----GCGC-UCG- -5'
25039 5' -53.3 NC_005336.1 + 18266 0.73 0.687439
Target:  5'- -gGGCUUGGaGUUGgGCAUgGCGAGCg -3'
miRNA:   3'- ggUUGGACUaCAGCgCGUAgCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 18741 0.69 0.891889
Target:  5'- uCCAugCUGuUGgCGCGuCGUCGCGGa- -3'
miRNA:   3'- -GGUugGACuACaGCGC-GUAGCGCUcg -5'
25039 5' -53.3 NC_005336.1 + 19444 0.72 0.776637
Target:  5'- uCCgAGCUUGGUGUCGCaC-UCGuCGAGCc -3'
miRNA:   3'- -GG-UUGGACUACAGCGcGuAGC-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 20636 0.66 0.963172
Target:  5'- uCCAugCUGGUGagucuUCGCGCGggaGgGGGa -3'
miRNA:   3'- -GGUugGACUAC-----AGCGCGUag-CgCUCg -5'
25039 5' -53.3 NC_005336.1 + 20754 0.66 0.966491
Target:  5'- uCCGuGCCgcugGUCGCGCGgaucugCGCGcGCa -3'
miRNA:   3'- -GGU-UGGacuaCAGCGCGUa-----GCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 21106 0.67 0.938431
Target:  5'- gCGGCCgGAgccGUUGCGCuugCGCGccGGCg -3'
miRNA:   3'- gGUUGGaCUa--CAGCGCGua-GCGC--UCG- -5'
25039 5' -53.3 NC_005336.1 + 22651 0.8 0.327759
Target:  5'- cCCAGCCUGcguucccggcgucGUG-CGCGCgGUCGUGAGCa -3'
miRNA:   3'- -GGUUGGAC-------------UACaGCGCG-UAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 24457 0.68 0.933468
Target:  5'- aCCGGCgUGAUGUCgaagGCGCAgaaG-GGGCu -3'
miRNA:   3'- -GGUUGgACUACAG----CGCGUag-CgCUCG- -5'
25039 5' -53.3 NC_005336.1 + 24566 0.66 0.969593
Target:  5'- -aAACCUGcaacuUCGCGCA-CGCGcGCa -3'
miRNA:   3'- ggUUGGACuac--AGCGCGUaGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 25451 0.67 0.943149
Target:  5'- -aGGCCUc--GUCGCGCAgcaGCGGGUu -3'
miRNA:   3'- ggUUGGAcuaCAGCGCGUag-CGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 28258 0.66 0.963172
Target:  5'- gCGGCgUGcgGUgGCGCGgcacugCGuCGGGCa -3'
miRNA:   3'- gGUUGgACuaCAgCGCGUa-----GC-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.