miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 5' -53.3 NC_005336.1 + 1605 0.66 0.966491
Target:  5'- gCCGACCUGc-GUCcgaGCGa---GCGAGCg -3'
miRNA:   3'- -GGUUGGACuaCAG---CGCguagCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 1605 0.66 0.966491
Target:  5'- gCCGACCUGc-GUCcgaGCGa---GCGAGCg -3'
miRNA:   3'- -GGUUGGACuaCAG---CGCguagCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 3851 0.66 0.966491
Target:  5'- gCCGccGCC-GAgcgcccgCGCGCGUCGCGcGCc -3'
miRNA:   3'- -GGU--UGGaCUaca----GCGCGUAGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 3851 0.66 0.966491
Target:  5'- gCCGccGCC-GAgcgcccgCGCGCGUCGCGcGCc -3'
miRNA:   3'- -GGU--UGGaCUaca----GCGCGUAGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 5399 0.69 0.877861
Target:  5'- gCCGcCCUccgcGAUGcCGUGCcggcUCGCGGGCa -3'
miRNA:   3'- -GGUuGGA----CUACaGCGCGu---AGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 6019 0.69 0.90498
Target:  5'- gCAGCCggaaGcgGUCGCaggucCcgCGCGAGCa -3'
miRNA:   3'- gGUUGGa---CuaCAGCGc----GuaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 8262 0.82 0.278856
Target:  5'- cCCAGCCgGAUGagcUCGCGCAUgacgcucgcgCGCGGGCg -3'
miRNA:   3'- -GGUUGGaCUAC---AGCGCGUA----------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 9150 0.67 0.951449
Target:  5'- uCCAgcACCUcgcgcggGAgcacgcaGUCGCGCAgcgCGCGcAGCg -3'
miRNA:   3'- -GGU--UGGA-------CUa------CAGCGCGUa--GCGC-UCG- -5'
25039 5' -53.3 NC_005336.1 + 9279 0.69 0.870507
Target:  5'- gCCAGCCgccg--CGCGCggCGCGAGa -3'
miRNA:   3'- -GGUUGGacuacaGCGCGuaGCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 9342 0.68 0.933468
Target:  5'- -uGACCUcgcagaGCGCgAUCGCGAGCa -3'
miRNA:   3'- ggUUGGAcuacagCGCG-UAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 9446 0.68 0.922808
Target:  5'- gCCAGUCgGAaGcagCGCGCGUCcGCGGGCa -3'
miRNA:   3'- -GGUUGGaCUaCa--GCGCGUAG-CGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 9556 0.71 0.804323
Target:  5'- gCAGCCg-----CGCGCGgcguUCGCGAGCa -3'
miRNA:   3'- gGUUGGacuacaGCGCGU----AGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 9641 0.7 0.862934
Target:  5'- gCGGCCUGGUGcgcgagCGCuGCGUCcgaGAGCg -3'
miRNA:   3'- gGUUGGACUACa-----GCG-CGUAGcg-CUCG- -5'
25039 5' -53.3 NC_005336.1 + 9857 0.66 0.963172
Target:  5'- gCAGCCguggcgGAUGagcUCGUGCAccaccuccggcCGCGGGCg -3'
miRNA:   3'- gGUUGGa-----CUAC---AGCGCGUa----------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 9948 0.66 0.963172
Target:  5'- aCAGCgUGuGUGUcCGCGCcccCGuCGAGCa -3'
miRNA:   3'- gGUUGgAC-UACA-GCGCGua-GC-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 9965 0.69 0.891889
Target:  5'- gUCAGCCacaUGAggaGUCGCGCAccaccagcuUCGCGcAGUc -3'
miRNA:   3'- -GGUUGG---ACUa--CAGCGCGU---------AGCGC-UCG- -5'
25039 5' -53.3 NC_005336.1 + 9986 0.68 0.917109
Target:  5'- aCgAGCuCUGcaGUCGcCGCG-CGCGAGCg -3'
miRNA:   3'- -GgUUG-GACuaCAGC-GCGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 10513 0.66 0.969593
Target:  5'- gCgAACCgcugcGUCGCGgG-CGCGGGCg -3'
miRNA:   3'- -GgUUGGacua-CAGCGCgUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 11016 0.7 0.854356
Target:  5'- gCAGCUUGGUGUUGUucgcaGCGUCGUcccgcccGGGCa -3'
miRNA:   3'- gGUUGGACUACAGCG-----CGUAGCG-------CUCG- -5'
25039 5' -53.3 NC_005336.1 + 12230 0.75 0.573777
Target:  5'- gCCGugcGCCggaUGAUGUCGCGC---GCGAGCg -3'
miRNA:   3'- -GGU---UGG---ACUACAGCGCGuagCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.