miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 5' -53.3 NC_005336.1 + 78179 0.71 0.804323
Target:  5'- gCAugCgguUGAUGUCGUuCAcgCGCGAGCa -3'
miRNA:   3'- gGUugG---ACUACAGCGcGUa-GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 14999 0.73 0.717937
Target:  5'- cCgGGCCUcGGgcUCGCGCGgcgCGCGGGCg -3'
miRNA:   3'- -GgUUGGA-CUacAGCGCGUa--GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 67597 0.72 0.737908
Target:  5'- gCCAGgCUGcgGUcucgCGCGCGUCGauaGGGCc -3'
miRNA:   3'- -GGUUgGACuaCA----GCGCGUAGCg--CUCG- -5'
25039 5' -53.3 NC_005336.1 + 98031 0.72 0.737908
Target:  5'- cCCAACCUGGa--CGCGC-UCGCGguGGCc -3'
miRNA:   3'- -GGUUGGACUacaGCGCGuAGCGC--UCG- -5'
25039 5' -53.3 NC_005336.1 + 60816 0.72 0.744812
Target:  5'- uCCGACaUGAUGUccuggaacuccgcgCGCGCGUCG-GGGCu -3'
miRNA:   3'- -GGUUGgACUACA--------------GCGCGUAGCgCUCG- -5'
25039 5' -53.3 NC_005336.1 + 35303 0.72 0.7575
Target:  5'- uCCAGCaCUG-UGagcaCGCGCAgcgccccgCGCGAGCg -3'
miRNA:   3'- -GGUUG-GACuACa---GCGCGUa-------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 124366 0.72 0.76713
Target:  5'- aCgGACUUGGUGgaCGCGCGgcugCGCGAGa -3'
miRNA:   3'- -GgUUGGACUACa-GCGCGUa---GCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 65222 0.72 0.770948
Target:  5'- gCAAgCUGcgcgcgcgcgugcccAUGUCGCGCGUCGUcGGCc -3'
miRNA:   3'- gGUUgGAC---------------UACAGCGCGUAGCGcUCG- -5'
25039 5' -53.3 NC_005336.1 + 61899 0.71 0.795243
Target:  5'- -gAACUUGgcGUCGCGCG-CGuUGAGCa -3'
miRNA:   3'- ggUUGGACuaCAGCGCGUaGC-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 83632 0.73 0.707834
Target:  5'- gCCGuCUcGAUGUCGCGCGUaagGCuGAGCg -3'
miRNA:   3'- -GGUuGGaCUACAGCGCGUAg--CG-CUCG- -5'
25039 5' -53.3 NC_005336.1 + 122663 0.73 0.687439
Target:  5'- cCCGGCCaGcgGUCGaucuGCcuUCGCGAGCg -3'
miRNA:   3'- -GGUUGGaCuaCAGCg---CGu-AGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 75693 0.74 0.670984
Target:  5'- -aGACCUcGGUGuacuugcagcugcgcUCGCGCAgcucCGCGAGCa -3'
miRNA:   3'- ggUUGGA-CUAC---------------AGCGCGUa---GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 121146 0.79 0.38441
Target:  5'- gCGACCUGAUGccgCGaCGCAgUGCGGGCg -3'
miRNA:   3'- gGUUGGACUACa--GC-GCGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 36370 0.77 0.464926
Target:  5'- gCGGCCUGcag-CGCGCG-CGCGAGCg -3'
miRNA:   3'- gGUUGGACuacaGCGCGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 109818 0.76 0.543247
Target:  5'- -aGGCCUcGGUGUCGagcaGCGcCGCGAGCg -3'
miRNA:   3'- ggUUGGA-CUACAGCg---CGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 75536 0.76 0.553371
Target:  5'- uCCAcgaGCUUGGcgcgcgUGUCGCGCGUgCGCGAGg -3'
miRNA:   3'- -GGU---UGGACU------ACAGCGCGUA-GCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 124408 0.75 0.594353
Target:  5'- aCCAACCUcguggacgcGGUGUCGCGUcUCGUGuGUc -3'
miRNA:   3'- -GGUUGGA---------CUACAGCGCGuAGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 35989 0.74 0.635786
Target:  5'- gCCAGCaUGcgGUCggucucuguGCGCGUCGCGcAGCg -3'
miRNA:   3'- -GGUUGgACuaCAG---------CGCGUAGCGC-UCG- -5'
25039 5' -53.3 NC_005336.1 + 104352 0.74 0.639935
Target:  5'- gCCGACCUcaccgacaaggucaaGGUGcgCGCGCugaccgugCGCGAGCg -3'
miRNA:   3'- -GGUUGGA---------------CUACa-GCGCGua------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 71486 0.74 0.646157
Target:  5'- uCCAAgCUGggGUaCGUGC-UCGUGGGCg -3'
miRNA:   3'- -GGUUgGACuaCA-GCGCGuAGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.