miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 5' -53.3 NC_005336.1 + 130710 1.15 0.002348
Target:  5'- uCCAACCUGAUGUCGCGCAUCGCGAGCa -3'
miRNA:   3'- -GGUUGGACUACAGCGCGUAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 8262 0.82 0.278856
Target:  5'- cCCAGCCgGAUGagcUCGCGCAUgacgcucgcgCGCGGGCg -3'
miRNA:   3'- -GGUUGGaCUAC---AGCGCGUA----------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 22651 0.8 0.327759
Target:  5'- cCCAGCCUGcguucccggcgucGUG-CGCGCgGUCGUGAGCa -3'
miRNA:   3'- -GGUUGGAC-------------UACaGCGCG-UAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 72147 0.8 0.351712
Target:  5'- -aGACgCUGGUGUUGCGCGcggcgCGCGAGCc -3'
miRNA:   3'- ggUUG-GACUACAGCGCGUa----GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 121146 0.79 0.38441
Target:  5'- gCGACCUGAUGccgCGaCGCAgUGCGGGCg -3'
miRNA:   3'- gGUUGGACUACa--GC-GCGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 91000 0.79 0.387789
Target:  5'- gCCGGCCuccUGGuUGUUGCGCAcgguggugcuggccuUCGCGAGCa -3'
miRNA:   3'- -GGUUGG---ACU-ACAGCGCGU---------------AGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 36370 0.77 0.464926
Target:  5'- gCGGCCUGcag-CGCGCG-CGCGAGCg -3'
miRNA:   3'- gGUUGGACuacaGCGCGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 109818 0.76 0.543247
Target:  5'- -aGGCCUcGGUGUCGagcaGCGcCGCGAGCg -3'
miRNA:   3'- ggUUGGA-CUACAGCg---CGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 75536 0.76 0.553371
Target:  5'- uCCAcgaGCUUGGcgcgcgUGUCGCGCGUgCGCGAGg -3'
miRNA:   3'- -GGU---UGGACU------ACAGCGCGUA-GCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 46921 0.75 0.573777
Target:  5'- uCCGuuauCCUGAgagGUCGCGCAcuuuUUGCgGAGCu -3'
miRNA:   3'- -GGUu---GGACUa--CAGCGCGU----AGCG-CUCG- -5'
25039 5' -53.3 NC_005336.1 + 12230 0.75 0.573777
Target:  5'- gCCGugcGCCggaUGAUGUCGCGC---GCGAGCg -3'
miRNA:   3'- -GGU---UGG---ACUACAGCGCGuagCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 124408 0.75 0.594353
Target:  5'- aCCAACCUcguggacgcGGUGUCGCGUcUCGUGuGUc -3'
miRNA:   3'- -GGUUGGA---------CUACAGCGCGuAGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 62773 0.75 0.615043
Target:  5'- aCAACCUGcAUGagCGCGgAUCGCGcGGCc -3'
miRNA:   3'- gGUUGGAC-UACa-GCGCgUAGCGC-UCG- -5'
25039 5' -53.3 NC_005336.1 + 35989 0.74 0.635786
Target:  5'- gCCAGCaUGcgGUCggucucuguGCGCGUCGCGcAGCg -3'
miRNA:   3'- -GGUUGgACuaCAG---------CGCGUAGCGC-UCG- -5'
25039 5' -53.3 NC_005336.1 + 104352 0.74 0.639935
Target:  5'- gCCGACCUcaccgacaaggucaaGGUGcgCGCGCugaccgugCGCGAGCg -3'
miRNA:   3'- -GGUUGGA---------------CUACa-GCGCGua------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 71486 0.74 0.646157
Target:  5'- uCCAAgCUGggGUaCGUGC-UCGUGGGCg -3'
miRNA:   3'- -GGUUgGACuaCA-GCGCGuAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 75751 0.74 0.666856
Target:  5'- cUCAGCgaGGugcuUGUUGCGCAgCGUGAGCa -3'
miRNA:   3'- -GGUUGgaCU----ACAGCGCGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 75693 0.74 0.670984
Target:  5'- -aGACCUcGGUGuacuugcagcugcgcUCGCGCAgcucCGCGAGCa -3'
miRNA:   3'- ggUUGGA-CUAC---------------AGCGCGUa---GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 39230 0.73 0.677167
Target:  5'- gCCAugUUGAagcUGUcCGCGaCGUCGuCGAGCu -3'
miRNA:   3'- -GGUugGACU---ACA-GCGC-GUAGC-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 18266 0.73 0.687439
Target:  5'- -gGGCUUGGaGUUGgGCAUgGCGAGCg -3'
miRNA:   3'- ggUUGGACUaCAGCgCGUAgCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.