miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 5' -53.3 NC_005336.1 + 85188 0.66 0.963514
Target:  5'- aCCAGCgaGcccUCGCGCucccaguacucgcgCGCGAGCa -3'
miRNA:   3'- -GGUUGgaCuacAGCGCGua------------GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 61356 0.66 0.972484
Target:  5'- aCAGCUcGGUGgccgacgCGUGCA-CGuCGAGCa -3'
miRNA:   3'- gGUUGGaCUACa------GCGCGUaGC-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 101727 0.66 0.972484
Target:  5'- gCGGCCgcgGAcGUgGC-CAcCGCGAGCg -3'
miRNA:   3'- gGUUGGa--CUaCAgCGcGUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 45924 0.66 0.972484
Target:  5'- aCCAGCCcguacuUGAgcUCGaGCAggucCGCGAGCu -3'
miRNA:   3'- -GGUUGG------ACUacAGCgCGUa---GCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 24566 0.66 0.969593
Target:  5'- -aAACCUGcaacuUCGCGCA-CGCGcGCa -3'
miRNA:   3'- ggUUGGACuac--AGCGCGUaGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 59131 0.66 0.972484
Target:  5'- aCCuuCCUGccgcaagccGUG-CGcCGCggCGCGGGCg -3'
miRNA:   3'- -GGuuGGAC---------UACaGC-GCGuaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 30431 0.66 0.969593
Target:  5'- -uGGCUaggGcgGcCGcCGCGUCGCGGGCc -3'
miRNA:   3'- ggUUGGa--CuaCaGC-GCGUAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 38832 0.66 0.966491
Target:  5'- aCGACCaGAUGg-GCGaCAUCGUGGucGCg -3'
miRNA:   3'- gGUUGGaCUACagCGC-GUAGCGCU--CG- -5'
25039 5' -53.3 NC_005336.1 + 36558 0.66 0.959632
Target:  5'- -gGGCgUGAg--C-CGCGUCGCGGGCu -3'
miRNA:   3'- ggUUGgACUacaGcGCGUAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 3851 0.66 0.966491
Target:  5'- gCCGccGCC-GAgcgcccgCGCGCGUCGCGcGCc -3'
miRNA:   3'- -GGU--UGGaCUaca----GCGCGUAGCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 20754 0.66 0.966491
Target:  5'- uCCGuGCCgcugGUCGCGCGgaucugCGCGcGCa -3'
miRNA:   3'- -GGU-UGGacuaCAGCGCGUa-----GCGCuCG- -5'
25039 5' -53.3 NC_005336.1 + 1605 0.66 0.966491
Target:  5'- gCCGACCUGc-GUCcgaGCGa---GCGAGCg -3'
miRNA:   3'- -GGUUGGACuaCAG---CGCguagCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 10513 0.66 0.969593
Target:  5'- gCgAACCgcugcGUCGCGgG-CGCGGGCg -3'
miRNA:   3'- -GgUUGGacua-CAGCGCgUaGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 95003 0.66 0.966491
Target:  5'- aCCAGCagcaGUGcgCGCGCGguUCGCGGGa -3'
miRNA:   3'- -GGUUGgac-UACa-GCGCGU--AGCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 68889 0.66 0.966491
Target:  5'- uUCAGCaaGAagaccaucCGCGCgAUCGCGAGCu -3'
miRNA:   3'- -GGUUGgaCUaca-----GCGCG-UAGCGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 39512 0.66 0.963172
Target:  5'- aCGugCUGuacgCGCGCAUCuuCGGGCu -3'
miRNA:   3'- gGUugGACuacaGCGCGUAGc-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 122761 0.66 0.962134
Target:  5'- gCCGGCCUGcgGcuguUCGCGggaugccugcgcucCGUCGUGGGg -3'
miRNA:   3'- -GGUUGGACuaC----AGCGC--------------GUAGCGCUCg -5'
25039 5' -53.3 NC_005336.1 + 132591 0.66 0.962829
Target:  5'- -uGGCCgGAcUGUCGCGCGagcucuaUCaCGAGCu -3'
miRNA:   3'- ggUUGGaCU-ACAGCGCGU-------AGcGCUCG- -5'
25039 5' -53.3 NC_005336.1 + 28258 0.66 0.963172
Target:  5'- gCGGCgUGcgGUgGCGCGgcacugCGuCGGGCa -3'
miRNA:   3'- gGUUGgACuaCAgCGCGUa-----GC-GCUCG- -5'
25039 5' -53.3 NC_005336.1 + 76571 0.66 0.966491
Target:  5'- uCCAGuCCgUGAagacGUCGCGCAggUGCuuGAGCa -3'
miRNA:   3'- -GGUU-GG-ACUa---CAGCGCGUa-GCG--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.