miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25040 3' -57.2 NC_005336.1 + 50751 0.67 0.752984
Target:  5'- -cGcCUGCGaaacuaCGGCGcCGGUGCUCAc -3'
miRNA:   3'- cuCuGACGCgaa---GUCGC-GCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 50840 0.67 0.751038
Target:  5'- uGAGGCUGCGCacgagcccgcucUCGGCGCGGacgucgaagGcCUCGg -3'
miRNA:   3'- -CUCUGACGCGa-----------AGUCGCGCCa--------C-GAGU- -5'
25040 3' -57.2 NC_005336.1 + 52652 0.66 0.79089
Target:  5'- cGAG-CUGCGCggCgAGCuGCGGcGCUCc -3'
miRNA:   3'- -CUCuGACGCGaaG-UCG-CGCCaCGAGu -5'
25040 3' -57.2 NC_005336.1 + 58151 0.67 0.762648
Target:  5'- -uGGCUGCGCggcgaCGGCGCGGccGCg-- -3'
miRNA:   3'- cuCUGACGCGaa---GUCGCGCCa-CGagu -5'
25040 3' -57.2 NC_005336.1 + 58411 0.68 0.693049
Target:  5'- --cGCgGCGCUgCA-CGCGGUGCUCGc -3'
miRNA:   3'- cucUGaCGCGAaGUcGCGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 61013 0.68 0.703223
Target:  5'- -cGGCUGCGCguggugCGGcCGaUGGUGUUCAg -3'
miRNA:   3'- cuCUGACGCGaa----GUC-GC-GCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 61108 0.71 0.50919
Target:  5'- uGGACgUGCGCUUCGGCaacgaGGUGCUg- -3'
miRNA:   3'- cUCUG-ACGCGAAGUCGcg---CCACGAgu -5'
25040 3' -57.2 NC_005336.1 + 64566 0.66 0.826458
Target:  5'- uGAGgcGCUGCGCguggCGGCGCGcGUcguagacggGCUCc -3'
miRNA:   3'- -CUC--UGACGCGaa--GUCGCGC-CA---------CGAGu -5'
25040 3' -57.2 NC_005336.1 + 69800 0.68 0.73334
Target:  5'- cAGACgGUGC-UCAGCGUGuGcUGCUCGc -3'
miRNA:   3'- cUCUGaCGCGaAGUCGCGC-C-ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 70368 0.74 0.389607
Target:  5'- -uGGCUgaacaacuccugGCGCUUCAGCGCGGaggagucGCUCAu -3'
miRNA:   3'- cuCUGA------------CGCGAAGUCGCGCCa------CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 72039 0.68 0.713336
Target:  5'- cGGcACUGCGCgcggUCAagGCGGUGUUCGg -3'
miRNA:   3'- cUC-UGACGCGa---AGUcgCGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 72309 0.67 0.772193
Target:  5'- -cGGCgUGCGCgugaUCcGCGaGGUGCUCAa -3'
miRNA:   3'- cuCUG-ACGCGa---AGuCGCgCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 74457 0.69 0.620879
Target:  5'- aGAGAC-GCGCUcgcccgcgCGGCGCGuGcUGCUCGc -3'
miRNA:   3'- -CUCUGaCGCGAa-------GUCGCGC-C-ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 80115 0.66 0.799117
Target:  5'- aGGGCUGCGCagCGGCcuGCucaccgaGGUGUUCAc -3'
miRNA:   3'- cUCUGACGCGaaGUCG--CG-------CCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 90940 0.66 0.79089
Target:  5'- uGGGCUGCGUcgacCGGCGCGGgaaCUCc -3'
miRNA:   3'- cUCUGACGCGaa--GUCGCGCCac-GAGu -5'
25040 3' -57.2 NC_005336.1 + 92960 0.66 0.794562
Target:  5'- aGGACuUGCGCUgguugaugcccaggCAGaugGCGGUGUUCGu -3'
miRNA:   3'- cUCUG-ACGCGAa-------------GUCg--CGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 94060 0.66 0.787195
Target:  5'- -cGuCUGUGCgacuucauggugCGGCGCGGUGcCUCGc -3'
miRNA:   3'- cuCuGACGCGaa----------GUCGCGCCAC-GAGU- -5'
25040 3' -57.2 NC_005336.1 + 94173 0.68 0.723378
Target:  5'- gGAGAUUcCGCggUCGGCGCcGGUGCg-- -3'
miRNA:   3'- -CUCUGAcGCGa-AGUCGCG-CCACGagu -5'
25040 3' -57.2 NC_005336.1 + 94263 0.67 0.743212
Target:  5'- -cGGCgagGUGCUcgaCGGCGCGGUGUcCAg -3'
miRNA:   3'- cuCUGa--CGCGAa--GUCGCGCCACGaGU- -5'
25040 3' -57.2 NC_005336.1 + 95524 0.66 0.809002
Target:  5'- -cGACgcaaGCGCacuccggcgCGGCGCGGUGCg-- -3'
miRNA:   3'- cuCUGa---CGCGaa-------GUCGCGCCACGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.